miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17194 3' -54.1 NC_004333.2 + 25940 0.71 0.463409
Target:  5'- cGCGCGgCGCGAUgcCGGcgGCCAGuACGCg -3'
miRNA:   3'- -CGCGCaGCGCUA--GCUcaUGGUC-UGUG- -5'
17194 3' -54.1 NC_004333.2 + 27876 0.66 0.775745
Target:  5'- -gGCuUCGUGGUCGAcUACUcggcGGACACg -3'
miRNA:   3'- cgCGcAGCGCUAGCUcAUGG----UCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 28041 0.67 0.690876
Target:  5'- uCGUGUCGCucguGAUCGGcGUaagcacguccuGCCAGAUGCg -3'
miRNA:   3'- cGCGCAGCG----CUAGCU-CA-----------UGGUCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 28181 0.7 0.536578
Target:  5'- cGCGCGUUGaGAuuuUCGGcGUGCCGcucGACACg -3'
miRNA:   3'- -CGCGCAGCgCU---AGCU-CAUGGU---CUGUG- -5'
17194 3' -54.1 NC_004333.2 + 28303 0.69 0.580171
Target:  5'- cGCGCGUCaCGGUCacGUGacgcgcCCGGACGCg -3'
miRNA:   3'- -CGCGCAGcGCUAGcuCAU------GGUCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 28889 0.68 0.624458
Target:  5'- cGCGCGaUCGCGcUCGGcgcagGCCGG-CGCa -3'
miRNA:   3'- -CGCGC-AGCGCuAGCUca---UGGUCuGUG- -5'
17194 3' -54.1 NC_004333.2 + 29892 0.67 0.712672
Target:  5'- aGCGCuG-CGCGAUCGG--GCCGcGCGCg -3'
miRNA:   3'- -CGCG-CaGCGCUAGCUcaUGGUcUGUG- -5'
17194 3' -54.1 NC_004333.2 + 30170 0.68 0.668848
Target:  5'- cGCGgGUCGCGcAUCGAcgcGUuCCGucGGCGCu -3'
miRNA:   3'- -CGCgCAGCGC-UAGCU---CAuGGU--CUGUG- -5'
17194 3' -54.1 NC_004333.2 + 30294 0.74 0.31881
Target:  5'- cGCGCGgcgCGCGAUCGA---UCAGGCAg -3'
miRNA:   3'- -CGCGCa--GCGCUAGCUcauGGUCUGUg -5'
17194 3' -54.1 NC_004333.2 + 30550 0.72 0.395809
Target:  5'- aGCGCcuUCGCGAUCGucUGCCAGccgaACACc -3'
miRNA:   3'- -CGCGc-AGCGCUAGCucAUGGUC----UGUG- -5'
17194 3' -54.1 NC_004333.2 + 30939 0.66 0.765543
Target:  5'- uGCGCGagaCGuCGGagGAGaaccGCCAGGCGCu -3'
miRNA:   3'- -CGCGCa--GC-GCUagCUCa---UGGUCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 32525 0.71 0.439532
Target:  5'- gGCuCGUCGCGGcgcugaagggcgcCGAGUACgAGACACu -3'
miRNA:   3'- -CGcGCAGCGCUa------------GCUCAUGgUCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 32956 0.66 0.755201
Target:  5'- uGCGCGUCgggcagcuuuGCGAcuUCGgcauAGUGCUGGAaCGCg -3'
miRNA:   3'- -CGCGCAG----------CGCU--AGC----UCAUGGUCU-GUG- -5'
17194 3' -54.1 NC_004333.2 + 33294 0.73 0.386681
Target:  5'- cGCGCGUUGCGucggccgcAUCGAGccaACCGG-CGCg -3'
miRNA:   3'- -CGCGCAGCGC--------UAGCUCa--UGGUCuGUG- -5'
17194 3' -54.1 NC_004333.2 + 35690 0.69 0.602262
Target:  5'- aCGCccuucaGUCGCGAacgCGAGUGucggcUCAGGCACa -3'
miRNA:   3'- cGCG------CAGCGCUa--GCUCAU-----GGUCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 37083 0.67 0.701809
Target:  5'- uGCGCGgauUCGCGcuAUCGAGgacgUCGGGCAg -3'
miRNA:   3'- -CGCGC---AGCGC--UAGCUCau--GGUCUGUg -5'
17194 3' -54.1 NC_004333.2 + 37252 0.68 0.635571
Target:  5'- cGCGCGUCGUGAgcggCGuGUcGCC--GCGCu -3'
miRNA:   3'- -CGCGCAGCGCUa---GCuCA-UGGucUGUG- -5'
17194 3' -54.1 NC_004333.2 + 37820 1.13 0.000695
Target:  5'- aGCGCGUCGCGAUCGAGUACCAGACACa -3'
miRNA:   3'- -CGCGCAGCGCUAGCUCAUGGUCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 37928 0.68 0.657777
Target:  5'- -gGCcUCGgGcUCGAGU-CCGGACGCg -3'
miRNA:   3'- cgCGcAGCgCuAGCUCAuGGUCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 38372 0.75 0.287652
Target:  5'- cGCGCuGUCGCGuGUCGGGUgcgccggcgugacGCCGGcCACg -3'
miRNA:   3'- -CGCG-CAGCGC-UAGCUCA-------------UGGUCuGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.