miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17194 3' -54.1 NC_004333.2 + 1895 0.68 0.657777
Target:  5'- gGCgGgGUCGcCGAUCaggaAGUACCAGcCACg -3'
miRNA:   3'- -CG-CgCAGC-GCUAGc---UCAUGGUCuGUG- -5'
17194 3' -54.1 NC_004333.2 + 6656 0.67 0.679885
Target:  5'- aGCGCGcucggCGCGcUCGAG---CAGGCGCg -3'
miRNA:   3'- -CGCGCa----GCGCuAGCUCaugGUCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 6710 0.7 0.536578
Target:  5'- aGCGCGcugccgagCGCGAUCGAGUugauuACCugcgacugcGGCGCu -3'
miRNA:   3'- -CGCGCa-------GCGCUAGCUCA-----UGGu--------CUGUG- -5'
17194 3' -54.1 NC_004333.2 + 6851 0.7 0.504644
Target:  5'- cGCGCuGUCguauGCGAUCGGcUACCucgAGGCGCg -3'
miRNA:   3'- -CGCG-CAG----CGCUAGCUcAUGG---UCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 9228 0.66 0.765543
Target:  5'- aGCGCGcagcUGCGGUCGAG---CAGGCAa -3'
miRNA:   3'- -CGCGCa---GCGCUAGCUCaugGUCUGUg -5'
17194 3' -54.1 NC_004333.2 + 9733 0.7 0.49418
Target:  5'- cCGCGUCgGCGAcaUGAGcGCCGGAUGCg -3'
miRNA:   3'- cGCGCAG-CGCUa-GCUCaUGGUCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 11227 0.68 0.622235
Target:  5'- gGCGCGgcuccuugccgGCGcUCGAGUgcuGCCAGACGg -3'
miRNA:   3'- -CGCGCag---------CGCuAGCUCA---UGGUCUGUg -5'
17194 3' -54.1 NC_004333.2 + 11829 0.66 0.743678
Target:  5'- cGCGCacucaaggugaacGUCGgugcCGGUCGGcUGCCGGACAUc -3'
miRNA:   3'- -CGCG-------------CAGC----GCUAGCUcAUGGUCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 11944 0.66 0.755201
Target:  5'- cGCGCGcUCcagGCGGUCGAGcGCCuuGCAn -3'
miRNA:   3'- -CGCGC-AG---CGCUAGCUCaUGGucUGUg -5'
17194 3' -54.1 NC_004333.2 + 11974 0.74 0.31881
Target:  5'- cGCGCGUCGaCGAUCGcggccguaucgcGGUGCaaCGGAUGCg -3'
miRNA:   3'- -CGCGCAGC-GCUAGC------------UCAUG--GUCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 12753 0.69 0.591199
Target:  5'- cGCGCGcaCGUaGUCG--UACCAGACGCg -3'
miRNA:   3'- -CGCGCa-GCGcUAGCucAUGGUCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 13210 0.69 0.569186
Target:  5'- gGCGCGUCGCGuggacuUCG-GUGCC-GAuCAUc -3'
miRNA:   3'- -CGCGCAGCGCu-----AGCuCAUGGuCU-GUG- -5'
17194 3' -54.1 NC_004333.2 + 13872 0.66 0.775745
Target:  5'- aGCGCGcCGCGccgcgCGAaGUcgGCCGG-CACg -3'
miRNA:   3'- -CGCGCaGCGCua---GCU-CA--UGGUCuGUG- -5'
17194 3' -54.1 NC_004333.2 + 14967 0.7 0.514143
Target:  5'- cGCGCGUCGaugauaccgacguCGAUCGAGaaGCCGGuuaGCg -3'
miRNA:   3'- -CGCGCAGC-------------GCUAGCUCa-UGGUCug-UG- -5'
17194 3' -54.1 NC_004333.2 + 16850 0.67 0.701809
Target:  5'- aGCGCGUCGCGGccaaggcgaUCGAcGggcgACUguucGGCACg -3'
miRNA:   3'- -CGCGCAGCGCU---------AGCU-Ca---UGGu---CUGUG- -5'
17194 3' -54.1 NC_004333.2 + 17717 0.66 0.755201
Target:  5'- uCGCGuauuUCGCGAaCGuGUcggccacggcACCGGGCGCg -3'
miRNA:   3'- cGCGC----AGCGCUaGCuCA----------UGGUCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 20573 0.66 0.744731
Target:  5'- gGCGCGUCG-GGUCGcgccguGGUGuuucugCAGGCGCg -3'
miRNA:   3'- -CGCGCAGCgCUAGC------UCAUg-----GUCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 20975 0.68 0.640016
Target:  5'- cGCGCGgCGCGggCGAGUgggugcguuucgagcGCguGGCAg -3'
miRNA:   3'- -CGCGCaGCGCuaGCUCA---------------UGguCUGUg -5'
17194 3' -54.1 NC_004333.2 + 23890 0.66 0.744731
Target:  5'- cGCGUGagGCGAUCGAcaugACC--GCACa -3'
miRNA:   3'- -CGCGCagCGCUAGCUca--UGGucUGUG- -5'
17194 3' -54.1 NC_004333.2 + 25272 0.67 0.690876
Target:  5'- gGCGUcgacgucgaGUCGCGcagCGAGUuCgAGACGCg -3'
miRNA:   3'- -CGCG---------CAGCGCua-GCUCAuGgUCUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.