Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17194 | 3' | -54.1 | NC_004333.2 | + | 37820 | 1.13 | 0.000695 |
Target: 5'- aGCGCGUCGCGAUCGAGUACCAGACACa -3' miRNA: 3'- -CGCGCAGCGCUAGCUCAUGGUCUGUG- -5' |
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17194 | 3' | -54.1 | NC_004333.2 | + | 45090 | 0.81 | 0.121373 |
Target: 5'- aGCGCcacgCGCGGUCGAGcgGCCGGACAg -3' miRNA: 3'- -CGCGca--GCGCUAGCUCa-UGGUCUGUg -5' |
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17194 | 3' | -54.1 | NC_004333.2 | + | 38372 | 0.75 | 0.287652 |
Target: 5'- cGCGCuGUCGCGuGUCGGGUgcgccggcgugacGCCGGcCACg -3' miRNA: 3'- -CGCG-CAGCGC-UAGCUCA-------------UGGUCuGUG- -5' |
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17194 | 3' | -54.1 | NC_004333.2 | + | 11974 | 0.74 | 0.31881 |
Target: 5'- cGCGCGUCGaCGAUCGcggccguaucgcGGUGCaaCGGAUGCg -3' miRNA: 3'- -CGCGCAGC-GCUAGC------------UCAUG--GUCUGUG- -5' |
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17194 | 3' | -54.1 | NC_004333.2 | + | 30294 | 0.74 | 0.31881 |
Target: 5'- cGCGCGgcgCGCGAUCGA---UCAGGCAg -3' miRNA: 3'- -CGCGCa--GCGCUAGCUcauGGUCUGUg -5' |
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17194 | 3' | -54.1 | NC_004333.2 | + | 42109 | 0.74 | 0.31881 |
Target: 5'- gGCGUGUCGCGAggugCGccAGuUGCCGGuGCACg -3' miRNA: 3'- -CGCGCAGCGCUa---GC--UC-AUGGUC-UGUG- -5' |
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17194 | 3' | -54.1 | NC_004333.2 | + | 33294 | 0.73 | 0.386681 |
Target: 5'- cGCGCGUUGCGucggccgcAUCGAGccaACCGG-CGCg -3' miRNA: 3'- -CGCGCAGCGC--------UAGCUCa--UGGUCuGUG- -5' |
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17194 | 3' | -54.1 | NC_004333.2 | + | 30550 | 0.72 | 0.395809 |
Target: 5'- aGCGCcuUCGCGAUCGucUGCCAGccgaACACc -3' miRNA: 3'- -CGCGc-AGCGCUAGCucAUGGUC----UGUG- -5' |
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17194 | 3' | -54.1 | NC_004333.2 | + | 38958 | 0.72 | 0.405074 |
Target: 5'- aGCGCGaaGCGGcgCGGGUGCgCGGACGg -3' miRNA: 3'- -CGCGCagCGCUa-GCUCAUG-GUCUGUg -5' |
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17194 | 3' | -54.1 | NC_004333.2 | + | 32525 | 0.71 | 0.439532 |
Target: 5'- gGCuCGUCGCGGcgcugaagggcgcCGAGUACgAGACACu -3' miRNA: 3'- -CGcGCAGCGCUa------------GCUCAUGgUCUGUG- -5' |
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17194 | 3' | -54.1 | NC_004333.2 | + | 25940 | 0.71 | 0.463409 |
Target: 5'- cGCGCGgCGCGAUgcCGGcgGCCAGuACGCg -3' miRNA: 3'- -CGCGCaGCGCUA--GCUcaUGGUC-UGUG- -5' |
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17194 | 3' | -54.1 | NC_004333.2 | + | 9733 | 0.7 | 0.49418 |
Target: 5'- cCGCGUCgGCGAcaUGAGcGCCGGAUGCg -3' miRNA: 3'- cGCGCAG-CGCUa-GCUCaUGGUCUGUG- -5' |
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17194 | 3' | -54.1 | NC_004333.2 | + | 6851 | 0.7 | 0.504644 |
Target: 5'- cGCGCuGUCguauGCGAUCGGcUACCucgAGGCGCg -3' miRNA: 3'- -CGCG-CAG----CGCUAGCUcAUGG---UCUGUG- -5' |
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17194 | 3' | -54.1 | NC_004333.2 | + | 14967 | 0.7 | 0.514143 |
Target: 5'- cGCGCGUCGaugauaccgacguCGAUCGAGaaGCCGGuuaGCg -3' miRNA: 3'- -CGCGCAGC-------------GCUAGCUCa-UGGUCug-UG- -5' |
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17194 | 3' | -54.1 | NC_004333.2 | + | 28181 | 0.7 | 0.536578 |
Target: 5'- cGCGCGUUGaGAuuuUCGGcGUGCCGcucGACACg -3' miRNA: 3'- -CGCGCAGCgCU---AGCU-CAUGGU---CUGUG- -5' |
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17194 | 3' | -54.1 | NC_004333.2 | + | 6710 | 0.7 | 0.536578 |
Target: 5'- aGCGCGcugccgagCGCGAUCGAGUugauuACCugcgacugcGGCGCu -3' miRNA: 3'- -CGCGCa-------GCGCUAGCUCA-----UGGu--------CUGUG- -5' |
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17194 | 3' | -54.1 | NC_004333.2 | + | 46513 | 0.69 | 0.558254 |
Target: 5'- aGCGUGUC-CGcu--GGUACCGGACACu -3' miRNA: 3'- -CGCGCAGcGCuagcUCAUGGUCUGUG- -5' |
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17194 | 3' | -54.1 | NC_004333.2 | + | 13210 | 0.69 | 0.569186 |
Target: 5'- gGCGCGUCGCGuggacuUCG-GUGCC-GAuCAUc -3' miRNA: 3'- -CGCGCAGCGCu-----AGCuCAUGGuCU-GUG- -5' |
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17194 | 3' | -54.1 | NC_004333.2 | + | 46200 | 0.69 | 0.569186 |
Target: 5'- gGCGCGucUCGCgccgGAUC-AGcGCCAGGCGCu -3' miRNA: 3'- -CGCGC--AGCG----CUAGcUCaUGGUCUGUG- -5' |
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17194 | 3' | -54.1 | NC_004333.2 | + | 28303 | 0.69 | 0.580171 |
Target: 5'- cGCGCGUCaCGGUCacGUGacgcgcCCGGACGCg -3' miRNA: 3'- -CGCGCAGcGCUAGcuCAU------GGUCUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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