miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17194 3' -54.1 NC_004333.2 + 37820 1.13 0.000695
Target:  5'- aGCGCGUCGCGAUCGAGUACCAGACACa -3'
miRNA:   3'- -CGCGCAGCGCUAGCUCAUGGUCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 6656 0.67 0.679885
Target:  5'- aGCGCGcucggCGCGcUCGAG---CAGGCGCg -3'
miRNA:   3'- -CGCGCa----GCGCuAGCUCaugGUCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 16850 0.67 0.701809
Target:  5'- aGCGCGUCGCGGccaaggcgaUCGAcGggcgACUguucGGCACg -3'
miRNA:   3'- -CGCGCAGCGCU---------AGCU-Ca---UGGu---CUGUG- -5'
17194 3' -54.1 NC_004333.2 + 13872 0.66 0.775745
Target:  5'- aGCGCGcCGCGccgcgCGAaGUcgGCCGG-CACg -3'
miRNA:   3'- -CGCGCaGCGCua---GCU-CA--UGGUCuGUG- -5'
17194 3' -54.1 NC_004333.2 + 33294 0.73 0.386681
Target:  5'- cGCGCGUUGCGucggccgcAUCGAGccaACCGG-CGCg -3'
miRNA:   3'- -CGCGCAGCGC--------UAGCUCa--UGGUCuGUG- -5'
17194 3' -54.1 NC_004333.2 + 30550 0.72 0.395809
Target:  5'- aGCGCcuUCGCGAUCGucUGCCAGccgaACACc -3'
miRNA:   3'- -CGCGc-AGCGCUAGCucAUGGUC----UGUG- -5'
17194 3' -54.1 NC_004333.2 + 9733 0.7 0.49418
Target:  5'- cCGCGUCgGCGAcaUGAGcGCCGGAUGCg -3'
miRNA:   3'- cGCGCAG-CGCUa-GCUCaUGGUCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 14967 0.7 0.514143
Target:  5'- cGCGCGUCGaugauaccgacguCGAUCGAGaaGCCGGuuaGCg -3'
miRNA:   3'- -CGCGCAGC-------------GCUAGCUCa-UGGUCug-UG- -5'
17194 3' -54.1 NC_004333.2 + 12753 0.69 0.591199
Target:  5'- cGCGCGcaCGUaGUCG--UACCAGACGCg -3'
miRNA:   3'- -CGCGCa-GCGcUAGCucAUGGUCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 1895 0.68 0.657777
Target:  5'- gGCgGgGUCGcCGAUCaggaAGUACCAGcCACg -3'
miRNA:   3'- -CG-CgCAGC-GCUAGc---UCAUGGUCuGUG- -5'
17194 3' -54.1 NC_004333.2 + 11227 0.68 0.622235
Target:  5'- gGCGCGgcuccuugccgGCGcUCGAGUgcuGCCAGACGg -3'
miRNA:   3'- -CGCGCag---------CGCuAGCUCA---UGGUCUGUg -5'
17194 3' -54.1 NC_004333.2 + 46200 0.69 0.569186
Target:  5'- gGCGCGucUCGCgccgGAUC-AGcGCCAGGCGCu -3'
miRNA:   3'- -CGCGC--AGCG----CUAGcUCaUGGUCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 38372 0.75 0.287652
Target:  5'- cGCGCuGUCGCGuGUCGGGUgcgccggcgugacGCCGGcCACg -3'
miRNA:   3'- -CGCG-CAGCGC-UAGCUCA-------------UGGUCuGUG- -5'
17194 3' -54.1 NC_004333.2 + 28889 0.68 0.624458
Target:  5'- cGCGCGaUCGCGcUCGGcgcagGCCGG-CGCa -3'
miRNA:   3'- -CGCGC-AGCGCuAGCUca---UGGUCuGUG- -5'
17194 3' -54.1 NC_004333.2 + 11974 0.74 0.31881
Target:  5'- cGCGCGUCGaCGAUCGcggccguaucgcGGUGCaaCGGAUGCg -3'
miRNA:   3'- -CGCGCAGC-GCUAGC------------UCAUG--GUCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 13210 0.69 0.569186
Target:  5'- gGCGCGUCGCGuggacuUCG-GUGCC-GAuCAUc -3'
miRNA:   3'- -CGCGCAGCGCu-----AGCuCAUGGuCU-GUG- -5'
17194 3' -54.1 NC_004333.2 + 20975 0.68 0.640016
Target:  5'- cGCGCGgCGCGggCGAGUgggugcguuucgagcGCguGGCAg -3'
miRNA:   3'- -CGCGCaGCGCuaGCUCA---------------UGguCUGUg -5'
17194 3' -54.1 NC_004333.2 + 28041 0.67 0.690876
Target:  5'- uCGUGUCGCucguGAUCGGcGUaagcacguccuGCCAGAUGCg -3'
miRNA:   3'- cGCGCAGCG----CUAGCU-CA-----------UGGUCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 42109 0.74 0.31881
Target:  5'- gGCGUGUCGCGAggugCGccAGuUGCCGGuGCACg -3'
miRNA:   3'- -CGCGCAGCGCUa---GC--UC-AUGGUC-UGUG- -5'
17194 3' -54.1 NC_004333.2 + 25940 0.71 0.463409
Target:  5'- cGCGCGgCGCGAUgcCGGcgGCCAGuACGCg -3'
miRNA:   3'- -CGCGCaGCGCUA--GCUcaUGGUC-UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.