Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17194 | 5' | -61.5 | NC_004333.2 | + | 10147 | 0.66 | 0.422453 |
Target: 5'- cCGCGaUCC-GAC-CGAGCUCG-GGCa -3' miRNA: 3'- aGCGC-AGGcCUGaGCUCGGGCuCCGg -5' |
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17194 | 5' | -61.5 | NC_004333.2 | + | 25524 | 0.66 | 0.422453 |
Target: 5'- gCGCGUCuUGGuACgCGccGCUCGAGGUCa -3' miRNA: 3'- aGCGCAG-GCC-UGaGCu-CGGGCUCCGG- -5' |
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17194 | 5' | -61.5 | NC_004333.2 | + | 27741 | 0.66 | 0.422453 |
Target: 5'- gCGCGaaUCUGGuCggccgcCGAGCCCGucAGGCg -3' miRNA: 3'- aGCGC--AGGCCuGa-----GCUCGGGC--UCCGg -5' |
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17194 | 5' | -61.5 | NC_004333.2 | + | 13011 | 0.66 | 0.404553 |
Target: 5'- uUCGCG-CCGGGCaucaaCGccuGCgCGAGGUCc -3' miRNA: 3'- -AGCGCaGGCCUGa----GCu--CGgGCUCCGG- -5' |
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17194 | 5' | -61.5 | NC_004333.2 | + | 45650 | 0.66 | 0.395785 |
Target: 5'- cUCGCGaCCGGGCUggucgagcgccaUGAGCaCCGAGuaUu -3' miRNA: 3'- -AGCGCaGGCCUGA------------GCUCG-GGCUCcgG- -5' |
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17194 | 5' | -61.5 | NC_004333.2 | + | 41550 | 0.66 | 0.38714 |
Target: 5'- aCGCGcUCCGacuuCUCGAGCUcgccauggaucaCGAcGGCCg -3' miRNA: 3'- aGCGC-AGGCcu--GAGCUCGG------------GCU-CCGG- -5' |
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17194 | 5' | -61.5 | NC_004333.2 | + | 44402 | 0.66 | 0.375248 |
Target: 5'- gCGCGguacaacggccugCCGGGCUCGcuGGCUggugcgugCGAGGCg -3' miRNA: 3'- aGCGCa------------GGCCUGAGC--UCGG--------GCUCCGg -5' |
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17194 | 5' | -61.5 | NC_004333.2 | + | 10065 | 0.66 | 0.37357 |
Target: 5'- gCGUGUCgGGAUgccCGAGCUCGgucggaucgcgguacAGGUCg -3' miRNA: 3'- aGCGCAGgCCUGa--GCUCGGGC---------------UCCGG- -5' |
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17194 | 5' | -61.5 | NC_004333.2 | + | 40384 | 0.67 | 0.365254 |
Target: 5'- gCGCGgCC-GACUCGAaCCCGguugaagacgggcaaAGGCCg -3' miRNA: 3'- aGCGCaGGcCUGAGCUcGGGC---------------UCCGG- -5' |
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17194 | 5' | -61.5 | NC_004333.2 | + | 10112 | 0.67 | 0.361963 |
Target: 5'- aCGCGaUUCGGA-UCGAgGCCC-AGGUCg -3' miRNA: 3'- aGCGC-AGGCCUgAGCU-CGGGcUCCGG- -5' |
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17194 | 5' | -61.5 | NC_004333.2 | + | 20693 | 0.67 | 0.361963 |
Target: 5'- cUCGCGUCgaauUGGcC-CGAcuGCgCGAGGCCg -3' miRNA: 3'- -AGCGCAG----GCCuGaGCU--CGgGCUCCGG- -5' |
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17194 | 5' | -61.5 | NC_004333.2 | + | 28426 | 0.67 | 0.349009 |
Target: 5'- gUCGCG-CCGGugUCGcGCUgauucauguacuuguCG-GGCCg -3' miRNA: 3'- -AGCGCaGGCCugAGCuCGG---------------GCuCCGG- -5' |
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17194 | 5' | -61.5 | NC_004333.2 | + | 2319 | 0.67 | 0.337167 |
Target: 5'- cCGCGUUgaacuggCGGAaugCGAGCaCCGugcGGCCg -3' miRNA: 3'- aGCGCAG-------GCCUga-GCUCG-GGCu--CCGG- -5' |
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17194 | 5' | -61.5 | NC_004333.2 | + | 32389 | 0.67 | 0.322592 |
Target: 5'- cCGCGUCgggguucuCGGugUCG-GCCCGc-GCCu -3' miRNA: 3'- aGCGCAG--------GCCugAGCuCGGGCucCGG- -5' |
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17194 | 5' | -61.5 | NC_004333.2 | + | 45010 | 0.67 | 0.322592 |
Target: 5'- gCGCuGUCCGGccGCUCGAccGCgCGuGGCg -3' miRNA: 3'- aGCG-CAGGCC--UGAGCU--CGgGCuCCGg -5' |
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17194 | 5' | -61.5 | NC_004333.2 | + | 39000 | 0.68 | 0.293461 |
Target: 5'- gUCGCGUCgUGGuucguCUCGuGCuuGuuGGCCg -3' miRNA: 3'- -AGCGCAG-GCCu----GAGCuCGggCu-CCGG- -5' |
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17194 | 5' | -61.5 | NC_004333.2 | + | 26851 | 0.68 | 0.286506 |
Target: 5'- gUCGCGUCgcgcuCGGcaaacACUgCGAGCCCGAuGUCa -3' miRNA: 3'- -AGCGCAG-----GCC-----UGA-GCUCGGGCUcCGG- -5' |
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17194 | 5' | -61.5 | NC_004333.2 | + | 18503 | 0.69 | 0.272988 |
Target: 5'- aCGCGcUCgCGGugUCGAcGCCgccgaucgCGAGGCg -3' miRNA: 3'- aGCGC-AG-GCCugAGCU-CGG--------GCUCCGg -5' |
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17194 | 5' | -61.5 | NC_004333.2 | + | 37938 | 0.69 | 0.247495 |
Target: 5'- -aGCGcucaCCGGcCUCGGGCUCGAGuCCg -3' miRNA: 3'- agCGCa---GGCCuGAGCUCGGGCUCcGG- -5' |
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17194 | 5' | -61.5 | NC_004333.2 | + | 30466 | 0.69 | 0.241438 |
Target: 5'- gUCGaCGUCaCGGcuGCgccuaccuugUCGAGCCCGAgcgugcGGCCg -3' miRNA: 3'- -AGC-GCAG-GCC--UG----------AGCUCGGGCU------CCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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