Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17200 | 3' | -49.2 | NC_004333.2 | + | 3619 | 0.67 | 0.908184 |
Target: 5'- uCGGGCGCCU-GCGGGcCGUagcAGUCg -3' miRNA: 3'- -GCCUGCGGAgCGUUCuGUAguuUUAG- -5' |
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17200 | 3' | -49.2 | NC_004333.2 | + | 4660 | 0.67 | 0.908184 |
Target: 5'- aCGGGCagGCCggcgCGCGGGuCuuucuUCAGGAUCg -3' miRNA: 3'- -GCCUG--CGGa---GCGUUCuGu----AGUUUUAG- -5' |
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17200 | 3' | -49.2 | NC_004333.2 | + | 7152 | 0.7 | 0.794727 |
Target: 5'- uGuACGCaacugCGCGAGACGUCAAcAUCa -3' miRNA: 3'- gCcUGCGga---GCGUUCUGUAGUUuUAG- -5' |
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17200 | 3' | -49.2 | NC_004333.2 | + | 7680 | 0.7 | 0.804903 |
Target: 5'- -aGACGCaaUCGCAGGGCAUCA---UCa -3' miRNA: 3'- gcCUGCGg-AGCGUUCUGUAGUuuuAG- -5' |
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17200 | 3' | -49.2 | NC_004333.2 | + | 8710 | 0.68 | 0.886046 |
Target: 5'- cCGGGCGCCgcgccgaGCucGACGUCGcgcAUCg -3' miRNA: 3'- -GCCUGCGGag-----CGuuCUGUAGUuu-UAG- -5' |
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17200 | 3' | -49.2 | NC_004333.2 | + | 9052 | 0.67 | 0.927594 |
Target: 5'- uCGGuCGCCgccgCGCAcGGCcgCAcGAUCc -3' miRNA: 3'- -GCCuGCGGa---GCGUuCUGuaGUuUUAG- -5' |
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17200 | 3' | -49.2 | NC_004333.2 | + | 9247 | 0.68 | 0.87808 |
Target: 5'- gGGGCGCCUCGCcgcgugcGGCAUagccuUCg -3' miRNA: 3'- gCCUGCGGAGCGuu-----CUGUAguuuuAG- -5' |
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17200 | 3' | -49.2 | NC_004333.2 | + | 9495 | 0.66 | 0.938993 |
Target: 5'- cCGGACggcgugcgcaGCC-CGCAGGGCAgCGAAGa- -3' miRNA: 3'- -GCCUG----------CGGaGCGUUCUGUaGUUUUag -5' |
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17200 | 3' | -49.2 | NC_004333.2 | + | 11104 | 0.66 | 0.953807 |
Target: 5'- cCGGGCGCgCUUGgCGAGAUuaCGGGAUUu -3' miRNA: 3'- -GCCUGCG-GAGC-GUUCUGuaGUUUUAG- -5' |
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17200 | 3' | -49.2 | NC_004333.2 | + | 11956 | 0.7 | 0.804903 |
Target: 5'- gCGGucgaGCGCCUUGCAcGcGCGUCGAcGAUCg -3' miRNA: 3'- -GCC----UGCGGAGCGUuC-UGUAGUU-UUAG- -5' |
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17200 | 3' | -49.2 | NC_004333.2 | + | 13017 | 0.72 | 0.684738 |
Target: 5'- cCGGgcaucaACGCCUgCGCGAGGucCAUCAAGAUg -3' miRNA: 3'- -GCC------UGCGGA-GCGUUCU--GUAGUUUUAg -5' |
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17200 | 3' | -49.2 | NC_004333.2 | + | 13848 | 0.7 | 0.794727 |
Target: 5'- aCGGGCGCCgCGuCGAGcGCAUUGAGcgCg -3' miRNA: 3'- -GCCUGCGGaGC-GUUC-UGUAGUUUuaG- -5' |
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17200 | 3' | -49.2 | NC_004333.2 | + | 15821 | 0.7 | 0.794727 |
Target: 5'- -cGACGCCUgcgcacguucCGCAGGuCAUCAuuGUCc -3' miRNA: 3'- gcCUGCGGA----------GCGUUCuGUAGUuuUAG- -5' |
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17200 | 3' | -49.2 | NC_004333.2 | + | 16915 | 0.67 | 0.927594 |
Target: 5'- cCGGGCGCC-CGCGuGuuaAUCGugGUCg -3' miRNA: 3'- -GCCUGCGGaGCGUuCug-UAGUuuUAG- -5' |
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17200 | 3' | -49.2 | NC_004333.2 | + | 18418 | 0.67 | 0.908184 |
Target: 5'- --aACGCCUCGCGAucggcGGCGUCGAc--- -3' miRNA: 3'- gccUGCGGAGCGUU-----CUGUAGUUuuag -5' |
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17200 | 3' | -49.2 | NC_004333.2 | + | 18488 | 0.66 | 0.938993 |
Target: 5'- -cGACGCCgccgaUCGCGAGGCGUUg----- -3' miRNA: 3'- gcCUGCGG-----AGCGUUCUGUAGuuuuag -5' |
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17200 | 3' | -49.2 | NC_004333.2 | + | 21185 | 0.68 | 0.869831 |
Target: 5'- aGGGCG-CUCGCGA-ACAUCAGAc-- -3' miRNA: 3'- gCCUGCgGAGCGUUcUGUAGUUUuag -5' |
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17200 | 3' | -49.2 | NC_004333.2 | + | 26806 | 0.66 | 0.933447 |
Target: 5'- gGGGCGCCgaCGCAAuGgGUCAAGuUCc -3' miRNA: 3'- gCCUGCGGa-GCGUUcUgUAGUUUuAG- -5' |
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17200 | 3' | -49.2 | NC_004333.2 | + | 27691 | 0.68 | 0.87808 |
Target: 5'- --cGCGCUgcaGCGAGACGUCGuAGGUCa -3' miRNA: 3'- gccUGCGGag-CGUUCUGUAGU-UUUAG- -5' |
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17200 | 3' | -49.2 | NC_004333.2 | + | 28315 | 0.66 | 0.938993 |
Target: 5'- aGGAgCGCCgCGCGc-GCGUCAcgGUCa -3' miRNA: 3'- gCCU-GCGGaGCGUucUGUAGUuuUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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