Results 1 - 20 of 38 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17200 | 3' | -49.2 | NC_004333.2 | + | 40045 | 1.12 | 0.002353 |
Target: 5'- gCGGACGCCUCGCAAGACAUCAAAAUCg -3' miRNA: 3'- -GCCUGCGGAGCGUUCUGUAGUUUUAG- -5' |
|||||||
17200 | 3' | -49.2 | NC_004333.2 | + | 3619 | 0.67 | 0.908184 |
Target: 5'- uCGGGCGCCU-GCGGGcCGUagcAGUCg -3' miRNA: 3'- -GCCUGCGGAgCGUUCuGUAguuUUAG- -5' |
|||||||
17200 | 3' | -49.2 | NC_004333.2 | + | 27691 | 0.68 | 0.87808 |
Target: 5'- --cGCGCUgcaGCGAGACGUCGuAGGUCa -3' miRNA: 3'- gccUGCGGag-CGUUCUGUAGU-UUUAG- -5' |
|||||||
17200 | 3' | -49.2 | NC_004333.2 | + | 9247 | 0.68 | 0.87808 |
Target: 5'- gGGGCGCCUCGCcgcgugcGGCAUagccuUCg -3' miRNA: 3'- gCCUGCGGAGCGuu-----CUGUAguuuuAG- -5' |
|||||||
17200 | 3' | -49.2 | NC_004333.2 | + | 15821 | 0.7 | 0.794727 |
Target: 5'- -cGACGCCUgcgcacguucCGCAGGuCAUCAuuGUCc -3' miRNA: 3'- gcCUGCGGA----------GCGUUCuGUAGUuuUAG- -5' |
|||||||
17200 | 3' | -49.2 | NC_004333.2 | + | 13848 | 0.7 | 0.794727 |
Target: 5'- aCGGGCGCCgCGuCGAGcGCAUUGAGcgCg -3' miRNA: 3'- -GCCUGCGGaGC-GUUC-UGUAGUUUuaG- -5' |
|||||||
17200 | 3' | -49.2 | NC_004333.2 | + | 16915 | 0.67 | 0.927594 |
Target: 5'- cCGGGCGCC-CGCGuGuuaAUCGugGUCg -3' miRNA: 3'- -GCCUGCGGaGCGUuCug-UAGUuuUAG- -5' |
|||||||
17200 | 3' | -49.2 | NC_004333.2 | + | 4660 | 0.67 | 0.908184 |
Target: 5'- aCGGGCagGCCggcgCGCGGGuCuuucuUCAGGAUCg -3' miRNA: 3'- -GCCUG--CGGa---GCGUUCuGu----AGUUUUAG- -5' |
|||||||
17200 | 3' | -49.2 | NC_004333.2 | + | 11956 | 0.7 | 0.804903 |
Target: 5'- gCGGucgaGCGCCUUGCAcGcGCGUCGAcGAUCg -3' miRNA: 3'- -GCC----UGCGGAGCGUuC-UGUAGUU-UUAG- -5' |
|||||||
17200 | 3' | -49.2 | NC_004333.2 | + | 38804 | 0.72 | 0.696209 |
Target: 5'- gGGGCGCC--GCGAGACGgagGAGAUCa -3' miRNA: 3'- gCCUGCGGagCGUUCUGUag-UUUUAG- -5' |
|||||||
17200 | 3' | -49.2 | NC_004333.2 | + | 46198 | 0.72 | 0.672055 |
Target: 5'- uGGGCGCguCUCGCGccggaucagcgccAGGCGcUCGAAGUCa -3' miRNA: 3'- gCCUGCG--GAGCGU-------------UCUGU-AGUUUUAG- -5' |
|||||||
17200 | 3' | -49.2 | NC_004333.2 | + | 36002 | 0.66 | 0.953807 |
Target: 5'- gCGGuCGCCUUGauGGGgAUCAcGAUCa -3' miRNA: 3'- -GCCuGCGGAGCguUCUgUAGUuUUAG- -5' |
|||||||
17200 | 3' | -49.2 | NC_004333.2 | + | 13017 | 0.72 | 0.684738 |
Target: 5'- cCGGgcaucaACGCCUgCGCGAGGucCAUCAAGAUg -3' miRNA: 3'- -GCC------UGCGGA-GCGUUCU--GUAGUUUUAg -5' |
|||||||
17200 | 3' | -49.2 | NC_004333.2 | + | 29989 | 0.67 | 0.903972 |
Target: 5'- cCGG-CGCCgagCGCGAGcACcaugcggcgccgcucGUCGGGAUCg -3' miRNA: 3'- -GCCuGCGGa--GCGUUC-UG---------------UAGUUUUAG- -5' |
|||||||
17200 | 3' | -49.2 | NC_004333.2 | + | 18418 | 0.67 | 0.908184 |
Target: 5'- --aACGCCUCGCGAucggcGGCGUCGAc--- -3' miRNA: 3'- gccUGCGGAGCGUU-----CUGUAGUUuuag -5' |
|||||||
17200 | 3' | -49.2 | NC_004333.2 | + | 45188 | 0.68 | 0.886046 |
Target: 5'- gCGcGAuCGCCgCGCAgacAGGCGUCGAGuAUCg -3' miRNA: 3'- -GC-CU-GCGGaGCGU---UCUGUAGUUU-UAG- -5' |
|||||||
17200 | 3' | -49.2 | NC_004333.2 | + | 8710 | 0.68 | 0.886046 |
Target: 5'- cCGGGCGCCgcgccgaGCucGACGUCGcgcAUCg -3' miRNA: 3'- -GCCUGCGGag-----CGuuCUGUAGUuu-UAG- -5' |
|||||||
17200 | 3' | -49.2 | NC_004333.2 | + | 9052 | 0.67 | 0.927594 |
Target: 5'- uCGGuCGCCgccgCGCAcGGCcgCAcGAUCc -3' miRNA: 3'- -GCCuGCGGa---GCGUuCUGuaGUuUUAG- -5' |
|||||||
17200 | 3' | -49.2 | NC_004333.2 | + | 37693 | 0.67 | 0.927594 |
Target: 5'- gGGAUGUCgCGCGuGACAUCAu---- -3' miRNA: 3'- gCCUGCGGaGCGUuCUGUAGUuuuag -5' |
|||||||
17200 | 3' | -49.2 | NC_004333.2 | + | 9495 | 0.66 | 0.938993 |
Target: 5'- cCGGACggcgugcgcaGCC-CGCAGGGCAgCGAAGa- -3' miRNA: 3'- -GCCUG----------CGGaGCGUUCUGUaGUUUUag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home