miRNA display CGI


Results 21 - 40 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17202 3' -53.9 NC_004333.2 + 11781 0.73 0.333316
Target:  5'- -cAGGACGCCAgcacgccGCCCGG-CGCUGCGu -3'
miRNA:   3'- uuUCUUGUGGU-------UGGGCUaGCGGCGCu -5'
17202 3' -53.9 NC_004333.2 + 11891 0.68 0.61704
Target:  5'- uGGAGcGCGCCGucGCgCUGAUgGCCGCGu -3'
miRNA:   3'- -UUUCuUGUGGU--UG-GGCUAgCGGCGCu -5'
17202 3' -53.9 NC_004333.2 + 12432 0.67 0.684544
Target:  5'- --cGGGCGCUAcggcgccCCCGAcCGUCGCGAa -3'
miRNA:   3'- uuuCUUGUGGUu------GGGCUaGCGGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 14029 0.66 0.717738
Target:  5'- --cGGcCGCCGGCCUGAagUCGCCaagGCGGc -3'
miRNA:   3'- uuuCUuGUGGUUGGGCU--AGCGG---CGCU- -5'
17202 3' -53.9 NC_004333.2 + 15008 0.76 0.208766
Target:  5'- -cGGGcCGCCGACgCCGA-CGCCGCGAa -3'
miRNA:   3'- uuUCUuGUGGUUG-GGCUaGCGGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 16990 0.7 0.474935
Target:  5'- --cGAACGCgCAACUCGcggcauacgccGUCGCCGCGc -3'
miRNA:   3'- uuuCUUGUG-GUUGGGC-----------UAGCGGCGCu -5'
17202 3' -53.9 NC_004333.2 + 17188 0.67 0.695677
Target:  5'- --cGAGCcCCGAUCUGuuuAUCGUCGCGGg -3'
miRNA:   3'- uuuCUUGuGGUUGGGC---UAGCGGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 17618 0.67 0.66213
Target:  5'- cAAG-ACGCCGgccgcGCCCGGU-GCCGUGGc -3'
miRNA:   3'- uUUCuUGUGGU-----UGGGCUAgCGGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 18151 0.67 0.695677
Target:  5'- --cGAACGCCAcgagcaagaAgCCGAUUGCCgGCGu -3'
miRNA:   3'- uuuCUUGUGGU---------UgGGCUAGCGG-CGCu -5'
17202 3' -53.9 NC_004333.2 + 18682 0.66 0.728641
Target:  5'- gAAAGggUugCcGCCCGcgCcuGCCGCGc -3'
miRNA:   3'- -UUUCuuGugGuUGGGCuaG--CGGCGCu -5'
17202 3' -53.9 NC_004333.2 + 18987 0.66 0.760694
Target:  5'- --cGGGgGCCAuaGCUCGAUCGCCacaaacagGCGGc -3'
miRNA:   3'- uuuCUUgUGGU--UGGGCUAGCGG--------CGCU- -5'
17202 3' -53.9 NC_004333.2 + 19285 0.78 0.172149
Target:  5'- --cGAGCGCCGugCgGAaCGCCGCGAg -3'
miRNA:   3'- uuuCUUGUGGUugGgCUaGCGGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 19558 0.69 0.557729
Target:  5'- -cAGcGCGCCAGCgCCGAUCGCauagaacuggaucaUGCGGa -3'
miRNA:   3'- uuUCuUGUGGUUG-GGCUAGCG--------------GCGCU- -5'
17202 3' -53.9 NC_004333.2 + 19824 0.69 0.549998
Target:  5'- ---cGAUGCCGGCCCGAUCcCUGCGu -3'
miRNA:   3'- uuucUUGUGGUUGGGCUAGcGGCGCu -5'
17202 3' -53.9 NC_004333.2 + 20649 0.7 0.494844
Target:  5'- -cAGaAACACCAcggcgcgACCCGAcgCGCCGaCGAu -3'
miRNA:   3'- uuUC-UUGUGGU-------UGGGCUa-GCGGC-GCU- -5'
17202 3' -53.9 NC_004333.2 + 20924 0.72 0.368567
Target:  5'- -cAGGAUugCAACCCGA-CGCCcgGCGGc -3'
miRNA:   3'- uuUCUUGugGUUGGGCUaGCGG--CGCU- -5'
17202 3' -53.9 NC_004333.2 + 21472 0.67 0.673357
Target:  5'- --cGAAUGCCGG-CCGAUUGCCuauGCGAc -3'
miRNA:   3'- uuuCUUGUGGUUgGGCUAGCGG---CGCU- -5'
17202 3' -53.9 NC_004333.2 + 22946 0.72 0.368567
Target:  5'- --cGAGCGCCAguacgaucGCgCCGAUCGCCGgGc -3'
miRNA:   3'- uuuCUUGUGGU--------UG-GGCUAGCGGCgCu -5'
17202 3' -53.9 NC_004333.2 + 24071 0.66 0.750131
Target:  5'- ---uAGCACUugcCCCGAUCGCCGaacauCGAg -3'
miRNA:   3'- uuucUUGUGGuu-GGGCUAGCGGC-----GCU- -5'
17202 3' -53.9 NC_004333.2 + 25552 0.79 0.149613
Target:  5'- ---uGACACgCAACCCGGcugUCGCCGCGAc -3'
miRNA:   3'- uuucUUGUG-GUUGGGCU---AGCGGCGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.