miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17202 3' -53.9 NC_004333.2 + 1156 0.66 0.739443
Target:  5'- ----cACugCAuAUCCGAUCGCgGCGGc -3'
miRNA:   3'- uuucuUGugGU-UGGGCUAGCGgCGCU- -5'
17202 3' -53.9 NC_004333.2 + 1247 0.7 0.474935
Target:  5'- --cGGGCAaaGACCCGAagcaagcCGCCGCGAu -3'
miRNA:   3'- uuuCUUGUggUUGGGCUa------GCGGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 1862 0.66 0.728641
Target:  5'- --uGAcUAUCGGCUCGAaCGCCGUGAu -3'
miRNA:   3'- uuuCUuGUGGUUGGGCUaGCGGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 2397 0.69 0.583328
Target:  5'- ---cGGCGCCGgcggucGCCUGGUCGCCGUa- -3'
miRNA:   3'- uuucUUGUGGU------UGGGCUAGCGGCGcu -5'
17202 3' -53.9 NC_004333.2 + 2995 0.66 0.750131
Target:  5'- -uAGAcgcuCGCCGGCgCGucCGCCGCGAc -3'
miRNA:   3'- uuUCUu---GUGGUUGgGCuaGCGGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 3203 0.68 0.61704
Target:  5'- -cGGugaGCCGGCCCGGcgCGCCGCc- -3'
miRNA:   3'- uuUCuugUGGUUGGGCUa-GCGGCGcu -5'
17202 3' -53.9 NC_004333.2 + 3676 0.7 0.485365
Target:  5'- cAGGcGC-CCGACUgggcgaauaCGAUCGCCGCGAu -3'
miRNA:   3'- uUUCuUGuGGUUGG---------GCUAGCGGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 4237 0.69 0.528105
Target:  5'- cGAGAACAUCGGCgUGAggaUGCCGCGc -3'
miRNA:   3'- uUUCUUGUGGUUGgGCUa--GCGGCGCu -5'
17202 3' -53.9 NC_004333.2 + 4733 0.69 0.528105
Target:  5'- gAAAGAcccgcGCGCCGGCCUGcccGUCGCCaugaucGCGAu -3'
miRNA:   3'- -UUUCU-----UGUGGUUGGGC---UAGCGG------CGCU- -5'
17202 3' -53.9 NC_004333.2 + 4858 0.66 0.706746
Target:  5'- --cGcGCGCCGugCCGAU-GCCGCu- -3'
miRNA:   3'- uuuCuUGUGGUugGGCUAgCGGCGcu -5'
17202 3' -53.9 NC_004333.2 + 5457 0.66 0.736214
Target:  5'- --cGAACAggucaacgccggcuUCAACCCGAUCGaCC-CGAa -3'
miRNA:   3'- uuuCUUGU--------------GGUUGGGCUAGC-GGcGCU- -5'
17202 3' -53.9 NC_004333.2 + 6746 0.71 0.454421
Target:  5'- --cGAGCGCCAcggcgcCCCGGUCGCgCGCc- -3'
miRNA:   3'- uuuCUUGUGGUu-----GGGCUAGCG-GCGcu -5'
17202 3' -53.9 NC_004333.2 + 6824 0.67 0.684544
Target:  5'- cGAG-GCGCgCGACCgGggCGCCGUGGc -3'
miRNA:   3'- uUUCuUGUG-GUUGGgCuaGCGGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 6965 0.66 0.750131
Target:  5'- aAAAG-ACGCC-GCU--GUCGCCGCGAu -3'
miRNA:   3'- -UUUCuUGUGGuUGGgcUAGCGGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 7438 0.7 0.484318
Target:  5'- -cAGAGCugCAcgagacgGCCCGA-CGCCGUGu -3'
miRNA:   3'- uuUCUUGugGU-------UGGGCUaGCGGCGCu -5'
17202 3' -53.9 NC_004333.2 + 8376 0.7 0.517279
Target:  5'- -cGGGGCGCgAGcCCCGcgCGCCGCc- -3'
miRNA:   3'- uuUCUUGUGgUU-GGGCuaGCGGCGcu -5'
17202 3' -53.9 NC_004333.2 + 9063 0.71 0.414891
Target:  5'- --cGAACGCCGcgUCGGUCGCCGCc- -3'
miRNA:   3'- uuuCUUGUGGUugGGCUAGCGGCGcu -5'
17202 3' -53.9 NC_004333.2 + 9430 0.71 0.444344
Target:  5'- gGAAGAAgGcCCGACgCCGcgCGCCGaCGAc -3'
miRNA:   3'- -UUUCUUgU-GGUUG-GGCuaGCGGC-GCU- -5'
17202 3' -53.9 NC_004333.2 + 10738 0.66 0.717738
Target:  5'- --cGuGCACCGGCCgGcgCGaCCGUGAc -3'
miRNA:   3'- uuuCuUGUGGUUGGgCuaGC-GGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 10880 0.73 0.351057
Target:  5'- gGAAGAACGCCGGCgCGAcagucacuugCGCCGaCGAc -3'
miRNA:   3'- -UUUCUUGUGGUUGgGCUa---------GCGGC-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.