miRNA display CGI


Results 1 - 20 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17202 3' -53.9 NC_004333.2 + 40694 1.07 0.001627
Target:  5'- cAAAGAACACCAACCCGAUCGCCGCGAu -3'
miRNA:   3'- -UUUCUUGUGGUUGGGCUAGCGGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 42953 0.69 0.561051
Target:  5'- cGGGAugcGCugCAACCCGcacccUCGCCgGCGGa -3'
miRNA:   3'- uUUCU---UGugGUUGGGCu----AGCGG-CGCU- -5'
17202 3' -53.9 NC_004333.2 + 45586 0.69 0.583328
Target:  5'- ------gACCAGCCCGGUCGCgagauCGUGAu -3'
miRNA:   3'- uuucuugUGGUUGGGCUAGCG-----GCGCU- -5'
17202 3' -53.9 NC_004333.2 + 38873 0.66 0.756485
Target:  5'- --cGAACGCC-GCCCGuccgcgcacccgCGCCGCu- -3'
miRNA:   3'- uuuCUUGUGGuUGGGCua----------GCGGCGcu -5'
17202 3' -53.9 NC_004333.2 + 20924 0.72 0.368567
Target:  5'- -cAGGAUugCAACCCGA-CGCCcgGCGGc -3'
miRNA:   3'- uuUCUUGugGUUGGGCUaGCGG--CGCU- -5'
17202 3' -53.9 NC_004333.2 + 47178 0.72 0.409145
Target:  5'- gGAAGAACGCgCuGCCgCGcagcacgaggcacaaGUCGCCGCGAc -3'
miRNA:   3'- -UUUCUUGUG-GuUGG-GC---------------UAGCGGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 6746 0.71 0.454421
Target:  5'- --cGAGCGCCAcggcgcCCCGGUCGCgCGCc- -3'
miRNA:   3'- uuuCUUGUGGUu-----GGGCUAGCG-GCGcu -5'
17202 3' -53.9 NC_004333.2 + 38147 0.7 0.474935
Target:  5'- ---cGACGCCGACCCGGcCGCCGa-- -3'
miRNA:   3'- uuucUUGUGGUUGGGCUaGCGGCgcu -5'
17202 3' -53.9 NC_004333.2 + 30174 0.7 0.489568
Target:  5'- cGAGGGCACCAAgUCGGacucgcgcacgccguUUGCCGUGAu -3'
miRNA:   3'- uUUCUUGUGGUUgGGCU---------------AGCGGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 40842 0.69 0.549998
Target:  5'- cGAAGAggcgcGCGCCu-UCUGGUCGCCgGCGAu -3'
miRNA:   3'- -UUUCU-----UGUGGuuGGGCUAGCGG-CGCU- -5'
17202 3' -53.9 NC_004333.2 + 39818 0.7 0.495903
Target:  5'- --cGAACGCgCAuACCCGGcUGCCGUGAu -3'
miRNA:   3'- uuuCUUGUG-GU-UGGGCUaGCGGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 7438 0.7 0.484318
Target:  5'- -cAGAGCugCAcgagacgGCCCGA-CGCCGUGu -3'
miRNA:   3'- uuUCUUGugGU-------UGGGCUaGCGGCGCu -5'
17202 3' -53.9 NC_004333.2 + 15008 0.76 0.208766
Target:  5'- -cGGGcCGCCGACgCCGA-CGCCGCGAa -3'
miRNA:   3'- uuUCUuGUGGUUG-GGCUaGCGGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 4237 0.69 0.528105
Target:  5'- cGAGAACAUCGGCgUGAggaUGCCGCGc -3'
miRNA:   3'- uUUCUUGUGGUUGgGCUa--GCGGCGCu -5'
17202 3' -53.9 NC_004333.2 + 33371 0.75 0.265521
Target:  5'- -uGGAACGCCugcuGCCCGAUCGCguagaacgGCGAu -3'
miRNA:   3'- uuUCUUGUGGu---UGGGCUAGCGg-------CGCU- -5'
17202 3' -53.9 NC_004333.2 + 16990 0.7 0.474935
Target:  5'- --cGAACGCgCAACUCGcggcauacgccGUCGCCGCGc -3'
miRNA:   3'- uuuCUUGUG-GUUGGGC-----------UAGCGGCGCu -5'
17202 3' -53.9 NC_004333.2 + 19824 0.69 0.549998
Target:  5'- ---cGAUGCCGGCCCGAUCcCUGCGu -3'
miRNA:   3'- uuucUUGUGGUUGGGCUAGcGGCGCu -5'
17202 3' -53.9 NC_004333.2 + 45314 0.69 0.561051
Target:  5'- aGAAGGGCAUCGACgguuacaaGcUCGCCGCGAu -3'
miRNA:   3'- -UUUCUUGUGGUUGgg------CuAGCGGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 10880 0.73 0.351057
Target:  5'- gGAAGAACGCCGGCgCGAcagucacuugCGCCGaCGAc -3'
miRNA:   3'- -UUUCUUGUGGUUGgGCUa---------GCGGC-GCU- -5'
17202 3' -53.9 NC_004333.2 + 44862 0.71 0.443344
Target:  5'- aGAAGAuCGCCGcgcgcgacaaccuGCCCGAcUCGCUGCGc -3'
miRNA:   3'- -UUUCUuGUGGU-------------UGGGCU-AGCGGCGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.