miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17202 3' -53.9 NC_004333.2 + 40694 1.07 0.001627
Target:  5'- cAAAGAACACCAACCCGAUCGCCGCGAu -3'
miRNA:   3'- -UUUCUUGUGGUUGGGCUAGCGGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 25552 0.79 0.149613
Target:  5'- ---uGACACgCAACCCGGcugUCGCCGCGAc -3'
miRNA:   3'- uuucUUGUG-GUUGGGCU---AGCGGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 19285 0.78 0.172149
Target:  5'- --cGAGCGCCGugCgGAaCGCCGCGAg -3'
miRNA:   3'- uuuCUUGUGGUugGgCUaGCGGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 15008 0.76 0.208766
Target:  5'- -cGGGcCGCCGACgCCGA-CGCCGCGAa -3'
miRNA:   3'- uuUCUuGUGGUUG-GGCUaGCGGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 33371 0.75 0.265521
Target:  5'- -uGGAACGCCugcuGCCCGAUCGCguagaacgGCGAu -3'
miRNA:   3'- uuUCUUGUGGu---UGGGCUAGCGg-------CGCU- -5'
17202 3' -53.9 NC_004333.2 + 29060 0.74 0.290013
Target:  5'- --cGcACGCCGACCCGGcggccgcgcaacugaUCGCCGCGu -3'
miRNA:   3'- uuuCuUGUGGUUGGGCU---------------AGCGGCGCu -5'
17202 3' -53.9 NC_004333.2 + 11781 0.73 0.333316
Target:  5'- -cAGGACGCCAgcacgccGCCCGG-CGCUGCGu -3'
miRNA:   3'- uuUCUUGUGGU-------UGGGCUaGCGGCGCu -5'
17202 3' -53.9 NC_004333.2 + 10880 0.73 0.351057
Target:  5'- gGAAGAACGCCGGCgCGAcagucacuugCGCCGaCGAc -3'
miRNA:   3'- -UUUCUUGUGGUUGgGCUa---------GCGGC-GCU- -5'
17202 3' -53.9 NC_004333.2 + 22946 0.72 0.368567
Target:  5'- --cGAGCGCCAguacgaucGCgCCGAUCGCCGgGc -3'
miRNA:   3'- uuuCUUGUGGU--------UG-GGCUAGCGGCgCu -5'
17202 3' -53.9 NC_004333.2 + 20924 0.72 0.368567
Target:  5'- -cAGGAUugCAACCCGA-CGCCcgGCGGc -3'
miRNA:   3'- uuUCUUGugGUUGGGCUaGCGG--CGCU- -5'
17202 3' -53.9 NC_004333.2 + 46038 0.72 0.377544
Target:  5'- -cGGGACACCAcGCC---UCGCCGCGAc -3'
miRNA:   3'- uuUCUUGUGGU-UGGgcuAGCGGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 29973 0.72 0.377544
Target:  5'- cGAGGAugccGCGCgCGGCCCGAUCGCgcaGCGc -3'
miRNA:   3'- -UUUCU----UGUG-GUUGGGCUAGCGg--CGCu -5'
17202 3' -53.9 NC_004333.2 + 43054 0.72 0.386667
Target:  5'- cGAGAGCGCC-GCCCGcUCGuCCGCc- -3'
miRNA:   3'- uUUCUUGUGGuUGGGCuAGC-GGCGcu -5'
17202 3' -53.9 NC_004333.2 + 47178 0.72 0.409145
Target:  5'- gGAAGAACGCgCuGCCgCGcagcacgaggcacaaGUCGCCGCGAc -3'
miRNA:   3'- -UUUCUUGUG-GuUGG-GC---------------UAGCGGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 9063 0.71 0.414891
Target:  5'- --cGAACGCCGcgUCGGUCGCCGCc- -3'
miRNA:   3'- uuuCUUGUGGUugGGCUAGCGGCGcu -5'
17202 3' -53.9 NC_004333.2 + 44862 0.71 0.443344
Target:  5'- aGAAGAuCGCCGcgcgcgacaaccuGCCCGAcUCGCUGCGc -3'
miRNA:   3'- -UUUCUuGUGGU-------------UGGGCU-AGCGGCGCu -5'
17202 3' -53.9 NC_004333.2 + 39352 0.71 0.444344
Target:  5'- --uGAGCAgCCAACCugCGAUCGCgCGCGc -3'
miRNA:   3'- uuuCUUGU-GGUUGG--GCUAGCG-GCGCu -5'
17202 3' -53.9 NC_004333.2 + 9430 0.71 0.444344
Target:  5'- gGAAGAAgGcCCGACgCCGcgCGCCGaCGAc -3'
miRNA:   3'- -UUUCUUgU-GGUUG-GGCuaGCGGC-GCU- -5'
17202 3' -53.9 NC_004333.2 + 6746 0.71 0.454421
Target:  5'- --cGAGCGCCAcggcgcCCCGGUCGCgCGCc- -3'
miRNA:   3'- uuuCUUGUGGUu-----GGGCUAGCG-GCGcu -5'
17202 3' -53.9 NC_004333.2 + 1247 0.7 0.474935
Target:  5'- --cGGGCAaaGACCCGAagcaagcCGCCGCGAu -3'
miRNA:   3'- uuuCUUGUggUUGGGCUa------GCGGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.