miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17204 3' -55 NC_004333.2 + 6372 0.65 0.699612
Target:  5'- cGCAGCcuuucACCaGCGCGcUCGUU-GCGUCa -3'
miRNA:   3'- uCGUUG-----UGGcCGUGU-AGCAGuCGCAG- -5'
17204 3' -55 NC_004333.2 + 18325 0.65 0.699612
Target:  5'- uGCAGgguuCugCGGauuaGCAgcgugcCGUCGGCGUCg -3'
miRNA:   3'- uCGUU----GugGCCg---UGUa-----GCAGUCGCAG- -5'
17204 3' -55 NC_004333.2 + 47564 0.66 0.66631
Target:  5'- cGCGccgGCCGGCGCcUCGuUCAGCGn- -3'
miRNA:   3'- uCGUug-UGGCCGUGuAGC-AGUCGCag -5'
17204 3' -55 NC_004333.2 + 11912 0.66 0.661841
Target:  5'- aAGCGAUguACCGGCGCAagcuggagcgcgcCGUCGcgcugauggccGCGUCg -3'
miRNA:   3'- -UCGUUG--UGGCCGUGUa------------GCAGU-----------CGCAG- -5'
17204 3' -55 NC_004333.2 + 17696 0.66 0.655129
Target:  5'- cGGCcacGGCACCgGGCGCGgc--CGGCGUCu -3'
miRNA:   3'- -UCG---UUGUGG-CCGUGUagcaGUCGCAG- -5'
17204 3' -55 NC_004333.2 + 20711 0.66 0.655129
Target:  5'- cGCAGCGCCGuuGCGaCGcUC-GCGUCg -3'
miRNA:   3'- uCGUUGUGGCcgUGUaGC-AGuCGCAG- -5'
17204 3' -55 NC_004333.2 + 21538 0.66 0.648408
Target:  5'- aGGCAAUcgGCCGGCAUucgaacacuuguacaGUucCGUCcGCGUCc -3'
miRNA:   3'- -UCGUUG--UGGCCGUG---------------UA--GCAGuCGCAG- -5'
17204 3' -55 NC_004333.2 + 17514 0.66 0.648408
Target:  5'- cGCcACAuCCGGUGCccgggcgacguuuugAUCGUCAgcGCGUCg -3'
miRNA:   3'- uCGuUGU-GGCCGUG---------------UAGCAGU--CGCAG- -5'
17204 3' -55 NC_004333.2 + 28690 0.66 0.643924
Target:  5'- cAGCGA-GCUGGUACAUCGgaUUAGCcuGUCg -3'
miRNA:   3'- -UCGUUgUGGCCGUGUAGC--AGUCG--CAG- -5'
17204 3' -55 NC_004333.2 + 12468 0.66 0.643924
Target:  5'- -----gGCCGGCACGcccgggUCGUCAuucGCGUCc -3'
miRNA:   3'- ucguugUGGCCGUGU------AGCAGU---CGCAG- -5'
17204 3' -55 NC_004333.2 + 8849 0.66 0.66631
Target:  5'- aGGCAuuGCCGGCGacuUCGcCAGC-UCg -3'
miRNA:   3'- -UCGUugUGGCCGUgu-AGCaGUCGcAG- -5'
17204 3' -55 NC_004333.2 + 7335 0.66 0.66631
Target:  5'- cGCAGagAUCGGCGucuaAUCGUCAgGCGUUg -3'
miRNA:   3'- uCGUUg-UGGCCGUg---UAGCAGU-CGCAG- -5'
17204 3' -55 NC_004333.2 + 28316 0.66 0.688564
Target:  5'- cAGgAGCGCCGcGCGCG-CGUCAcgGUCa -3'
miRNA:   3'- -UCgUUGUGGC-CGUGUaGCAGUcgCAG- -5'
17204 3' -55 NC_004333.2 + 5077 0.66 0.688564
Target:  5'- cGCGACGgaaGGCACcgUGUCGuCGUCg -3'
miRNA:   3'- uCGUUGUgg-CCGUGuaGCAGUcGCAG- -5'
17204 3' -55 NC_004333.2 + 6677 0.66 0.688564
Target:  5'- uGCGACugCGGCGCuggg-CGGCG-Cg -3'
miRNA:   3'- uCGUUGugGCCGUGuagcaGUCGCaG- -5'
17204 3' -55 NC_004333.2 + 29130 0.66 0.688564
Target:  5'- aAGCGcCAacUCGGCGCgAUCGUgGGCGg- -3'
miRNA:   3'- -UCGUuGU--GGCCGUG-UAGCAgUCGCag -5'
17204 3' -55 NC_004333.2 + 37433 0.66 0.688564
Target:  5'- cGCGACGCgGuGCACGUCGcgUAGCc-- -3'
miRNA:   3'- uCGUUGUGgC-CGUGUAGCa-GUCGcag -5'
17204 3' -55 NC_004333.2 + 28537 0.66 0.688564
Target:  5'- uGCGACugUGGCGCG-CGUaacuGGCGg- -3'
miRNA:   3'- uCGUUGugGCCGUGUaGCAg---UCGCag -5'
17204 3' -55 NC_004333.2 + 46356 0.66 0.67746
Target:  5'- cGGCGAUAUCGuGCcaGUUGUCGGUGUa -3'
miRNA:   3'- -UCGUUGUGGC-CGugUAGCAGUCGCAg -5'
17204 3' -55 NC_004333.2 + 38629 0.66 0.67746
Target:  5'- cAGCAGCugugucguuGCCGugaGCGCGUCGgacggCAacGCGUCg -3'
miRNA:   3'- -UCGUUG---------UGGC---CGUGUAGCa----GU--CGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.