miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17204 3' -55 NC_004333.2 + 692 0.69 0.500766
Target:  5'- uGGCAGCACCGGCcCGcUGUCGGgcacugccuaCGUUa -3'
miRNA:   3'- -UCGUUGUGGCCGuGUaGCAGUC----------GCAG- -5'
17204 3' -55 NC_004333.2 + 1511 0.68 0.576824
Target:  5'- gAGCGACGgcgagUCGGCcuGCAgcgugaUCGUCAGCGg- -3'
miRNA:   3'- -UCGUUGU-----GGCCG--UGU------AGCAGUCGCag -5'
17204 3' -55 NC_004333.2 + 1648 0.7 0.410194
Target:  5'- cAGCAuggGCAUcgaCGGCACGUUGUCGGCc-- -3'
miRNA:   3'- -UCGU---UGUG---GCCGUGUAGCAGUCGcag -5'
17204 3' -55 NC_004333.2 + 2110 0.67 0.5991
Target:  5'- gAGCAuCGCCucgaacucGGCGCGUUGcaacUCGGCGUUc -3'
miRNA:   3'- -UCGUuGUGG--------CCGUGUAGC----AGUCGCAG- -5'
17204 3' -55 NC_004333.2 + 2461 0.73 0.284066
Target:  5'- aGGCGAcCGCCGGCGC--CGUCAugggcuacgccGCGUCg -3'
miRNA:   3'- -UCGUU-GUGGCCGUGuaGCAGU-----------CGCAG- -5'
17204 3' -55 NC_004333.2 + 2668 0.82 0.078901
Target:  5'- cGCAACGCCGGCAgcUUG-CAGCGUCg -3'
miRNA:   3'- uCGUUGUGGCCGUguAGCaGUCGCAG- -5'
17204 3' -55 NC_004333.2 + 3067 0.67 0.5991
Target:  5'- cGGCGgacGCGCCGGCgagcgucuacgGCAUucCGUUgacgGGCGUCa -3'
miRNA:   3'- -UCGU---UGUGGCCG-----------UGUA--GCAG----UCGCAG- -5'
17204 3' -55 NC_004333.2 + 3447 0.68 0.543786
Target:  5'- cGGCGACGCCGGUcgACAUUGUUccGC-UCg -3'
miRNA:   3'- -UCGUUGUGGCCG--UGUAGCAGu-CGcAG- -5'
17204 3' -55 NC_004333.2 + 3516 0.67 0.5991
Target:  5'- cAGCuGCugCGGCugAUCGgcguaaAGCGg- -3'
miRNA:   3'- -UCGuUGugGCCGugUAGCag----UCGCag -5'
17204 3' -55 NC_004333.2 + 4927 0.72 0.322404
Target:  5'- cAGCGGCAUCGGCACggCG-CGcGCGUa -3'
miRNA:   3'- -UCGUUGUGGCCGUGuaGCaGU-CGCAg -5'
17204 3' -55 NC_004333.2 + 4956 0.7 0.449235
Target:  5'- cGCAGCGCgCGcUACAUgGUCAGCGg- -3'
miRNA:   3'- uCGUUGUG-GCcGUGUAgCAGUCGCag -5'
17204 3' -55 NC_004333.2 + 5058 0.68 0.565753
Target:  5'- uGGcCGACGUCGGCGCggCGcugaaCAGCGUCa -3'
miRNA:   3'- -UC-GUUGUGGCCGUGuaGCa----GUCGCAG- -5'
17204 3' -55 NC_004333.2 + 5077 0.66 0.688564
Target:  5'- cGCGACGgaaGGCACcgUGUCGuCGUCg -3'
miRNA:   3'- uCGUUGUgg-CCGUGuaGCAGUcGCAG- -5'
17204 3' -55 NC_004333.2 + 6372 0.65 0.699612
Target:  5'- cGCAGCcuuucACCaGCGCGcUCGUU-GCGUCa -3'
miRNA:   3'- uCGUUG-----UGGcCGUGU-AGCAGuCGCAG- -5'
17204 3' -55 NC_004333.2 + 6426 0.74 0.267678
Target:  5'- gGGCucAAUACCGGCGCAUCGUaaaaucgcgcggugCGGuCGUCc -3'
miRNA:   3'- -UCG--UUGUGGCCGUGUAGCA--------------GUC-GCAG- -5'
17204 3' -55 NC_004333.2 + 6677 0.66 0.688564
Target:  5'- uGCGACugCGGCGCuggg-CGGCG-Cg -3'
miRNA:   3'- uCGUUGugGCCGUGuagcaGUCGCaG- -5'
17204 3' -55 NC_004333.2 + 6825 0.71 0.399832
Target:  5'- cGGCGGCACUccggcggGGCAC-UCGUCGGCu-- -3'
miRNA:   3'- -UCGUUGUGG-------CCGUGuAGCAGUCGcag -5'
17204 3' -55 NC_004333.2 + 7335 0.66 0.66631
Target:  5'- cGCAGagAUCGGCGucuaAUCGUCAgGCGUUg -3'
miRNA:   3'- uCGUUg-UGGCCGUg---UAGCAGU-CGCAG- -5'
17204 3' -55 NC_004333.2 + 8652 0.69 0.490241
Target:  5'- cGCGGCGcCCGGCuugcucgugACGgugcCGUCGGCGUUc -3'
miRNA:   3'- uCGUUGU-GGCCG---------UGUa---GCAGUCGCAG- -5'
17204 3' -55 NC_004333.2 + 8780 0.66 0.688564
Target:  5'- uGGCGAaguCGCCGGCAaugccuugCGcCGGCGUg -3'
miRNA:   3'- -UCGUU---GUGGCCGUgua-----GCaGUCGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.