miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17207 3' -58.7 NC_004333.2 + 13252 0.68 0.43337
Target:  5'- aCGAUCGUa-UCGCGCCcaGUCGGCGAc -3'
miRNA:   3'- gGCUAGCAgaGGUGCGGc-CGGCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 13980 0.67 0.491138
Target:  5'- aCGAUCGcCacggcagCCGCcgcgcagcccguGCCGGCCGACu- -3'
miRNA:   3'- gGCUAGCaGa------GGUG------------CGGCCGGCUGcu -5'
17207 3' -58.7 NC_004333.2 + 15285 0.66 0.552224
Target:  5'- aCGGcCGUCUgaCCGgccugcUGCCGGCCGuGCGGa -3'
miRNA:   3'- gGCUaGCAGA--GGU------GCGGCCGGC-UGCU- -5'
17207 3' -58.7 NC_004333.2 + 17275 0.71 0.300049
Target:  5'- -aGAUUGcCUUCgacgugaACGCCGGCCGGCGc -3'
miRNA:   3'- ggCUAGCaGAGG-------UGCGGCCGGCUGCu -5'
17207 3' -58.7 NC_004333.2 + 17374 0.72 0.266296
Target:  5'- cUCGGgcaUGUCgaggacgCUGCGCCGGCCGGCGu -3'
miRNA:   3'- -GGCUa--GCAGa------GGUGCGGCCGGCUGCu -5'
17207 3' -58.7 NC_004333.2 + 17606 0.71 0.276967
Target:  5'- aUCGAUCGUUgucaagacgccggCCGCGCCcggugccguGGCCGACa- -3'
miRNA:   3'- -GGCUAGCAGa------------GGUGCGG---------CCGGCUGcu -5'
17207 3' -58.7 NC_004333.2 + 18380 0.68 0.424128
Target:  5'- -gGAUCGUg-CgCACGCgCGuGCCGGCGAa -3'
miRNA:   3'- ggCUAGCAgaG-GUGCG-GC-CGGCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 18630 0.67 0.511183
Target:  5'- uUCGGauUCGcCgCCGCGCCGGCUGcCGc -3'
miRNA:   3'- -GGCU--AGCaGaGGUGCGGCCGGCuGCu -5'
17207 3' -58.7 NC_004333.2 + 18673 0.67 0.511183
Target:  5'- gCCGcccgCGcCUgCCGCGCCGGUCGuuuguugcACGAa -3'
miRNA:   3'- -GGCua--GCaGA-GGUGCGGCCGGC--------UGCU- -5'
17207 3' -58.7 NC_004333.2 + 20233 0.66 0.54186
Target:  5'- gCGAUCGa--CCGCGaCUGGCCuACGAu -3'
miRNA:   3'- gGCUAGCagaGGUGC-GGCCGGcUGCU- -5'
17207 3' -58.7 NC_004333.2 + 20514 0.67 0.501117
Target:  5'- gCCGGcCGcCgCCGCGCCGcucGCUGGCGGc -3'
miRNA:   3'- -GGCUaGCaGaGGUGCGGC---CGGCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 20563 0.67 0.491138
Target:  5'- gCUGAUCGUCggCGCGUCGggucgcGCCGugGu -3'
miRNA:   3'- -GGCUAGCAGagGUGCGGC------CGGCugCu -5'
17207 3' -58.7 NC_004333.2 + 22158 0.72 0.235089
Target:  5'- aCGAUUGcuUCUCCuugucgccgGCGgCGGCCGGCGGc -3'
miRNA:   3'- gGCUAGC--AGAGG---------UGCgGCCGGCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 22705 0.67 0.501117
Target:  5'- cCUGggCGUCaucaUCCAgCGCacaGGCgCGACGAa -3'
miRNA:   3'- -GGCuaGCAG----AGGU-GCGg--CCG-GCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 23510 0.74 0.172605
Target:  5'- cCCGAUaCGUCgaCCGauCCGGCCGGCGGc -3'
miRNA:   3'- -GGCUA-GCAGa-GGUgcGGCCGGCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 24599 0.68 0.406005
Target:  5'- gCCGGUCGgaUuuGCGCuCGuGCCGAUGAa -3'
miRNA:   3'- -GGCUAGCagAggUGCG-GC-CGGCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 24822 0.67 0.510173
Target:  5'- gCGAUCGUCgCCGCGUucgugagCGGCUucucgaccgauGACGGg -3'
miRNA:   3'- gGCUAGCAGaGGUGCG-------GCCGG-----------CUGCU- -5'
17207 3' -58.7 NC_004333.2 + 25292 0.68 0.442727
Target:  5'- uUCGG-CGUCgcaaCCGgGCCGacGCCGGCGAc -3'
miRNA:   3'- -GGCUaGCAGa---GGUgCGGC--CGGCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 25748 0.67 0.501117
Target:  5'- gCUGAUCagGUCgCCGCGUucgcgaCGGCCGGCa- -3'
miRNA:   3'- -GGCUAG--CAGaGGUGCG------GCCGGCUGcu -5'
17207 3' -58.7 NC_004333.2 + 25800 0.69 0.371256
Target:  5'- gCCGAcCGg--CCugcaGCUGGCCGGCGAg -3'
miRNA:   3'- -GGCUaGCagaGGug--CGGCCGGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.