miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17207 3' -58.7 NC_004333.2 + 236 0.7 0.338592
Target:  5'- uCgGGUCGcC-CCACGCCGuGCCGuuCGAu -3'
miRNA:   3'- -GgCUAGCaGaGGUGCGGC-CGGCu-GCU- -5'
17207 3' -58.7 NC_004333.2 + 1536 0.66 0.525415
Target:  5'- gUGAUCGUCagcggCACcucguugaacacgaaGCCGGCCGACa- -3'
miRNA:   3'- gGCUAGCAGag---GUG---------------CGGCCGGCUGcu -5'
17207 3' -58.7 NC_004333.2 + 2082 0.7 0.314747
Target:  5'- gCCGugaCGUCgggcaucaUCCGCGCCGGCguaacgcUGACGAa -3'
miRNA:   3'- -GGCua-GCAG--------AGGUGCGGCCG-------GCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 2627 0.69 0.371256
Target:  5'- gCCGAUCGUCUCgCAU-UCGcGUCGugGAa -3'
miRNA:   3'- -GGCUAGCAGAG-GUGcGGC-CGGCugCU- -5'
17207 3' -58.7 NC_004333.2 + 2761 0.67 0.501117
Target:  5'- gCCuGUCGg--CCGcCGCCGGCgCGACGc -3'
miRNA:   3'- -GGcUAGCagaGGU-GCGGCCG-GCUGCu -5'
17207 3' -58.7 NC_004333.2 + 2840 0.68 0.452198
Target:  5'- aCGGUCGUgaCgaaCGCGaCCGGCaCGGCGGc -3'
miRNA:   3'- gGCUAGCA--Gag-GUGC-GGCCG-GCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 3466 0.66 0.551185
Target:  5'- aCCGAag--CUCCcgcgacgacggcgACGCCGGUCGACa- -3'
miRNA:   3'- -GGCUagcaGAGG-------------UGCGGCCGGCUGcu -5'
17207 3' -58.7 NC_004333.2 + 5119 0.69 0.371256
Target:  5'- gCCGA-CGUCggCCAacaGCCGGCCGcCu- -3'
miRNA:   3'- -GGCUaGCAGa-GGUg--CGGCCGGCuGcu -5'
17207 3' -58.7 NC_004333.2 + 5433 0.68 0.424128
Target:  5'- cCCGAUCGacccgaagaaUCcgggcaUCCACGgCGGCgUGACGAu -3'
miRNA:   3'- -GGCUAGC----------AG------AGGUGCgGCCG-GCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 7785 0.68 0.430585
Target:  5'- aCGAUcCGUCgcugUCCGCGCCGaucaccgcuacgacGCCGugGu -3'
miRNA:   3'- gGCUA-GCAG----AGGUGCGGC--------------CGGCugCu -5'
17207 3' -58.7 NC_004333.2 + 7881 0.66 0.562648
Target:  5'- gCGAgcuaaacuacUCG--UCCGCGCuCGGCCuGGCGAa -3'
miRNA:   3'- gGCU----------AGCagAGGUGCG-GCCGG-CUGCU- -5'
17207 3' -58.7 NC_004333.2 + 9053 0.77 0.12203
Target:  5'- gUCGGUCGcCgCCGCGCaCGGCCGcACGAu -3'
miRNA:   3'- -GGCUAGCaGaGGUGCG-GCCGGC-UGCU- -5'
17207 3' -58.7 NC_004333.2 + 9294 0.69 0.388375
Target:  5'- aCGGUCGggUUUUCAcCGCCGGCCGGg-- -3'
miRNA:   3'- gGCUAGC--AGAGGU-GCGGCCGGCUgcu -5'
17207 3' -58.7 NC_004333.2 + 9670 0.74 0.177188
Target:  5'- aCCGGcCGaugCCGCGCCGGCUGGCGc -3'
miRNA:   3'- -GGCUaGCagaGGUGCGGCCGGCUGCu -5'
17207 3' -58.7 NC_004333.2 + 10661 0.67 0.501117
Target:  5'- gUGA-CGUCacggUCGCGCCGGCCGGu-- -3'
miRNA:   3'- gGCUaGCAGa---GGUGCGGCCGGCUgcu -5'
17207 3' -58.7 NC_004333.2 + 11351 0.66 0.531561
Target:  5'- gCGGuUCGUCgucaCCuuGCCGcGCuCGACGAg -3'
miRNA:   3'- gGCU-AGCAGa---GGugCGGC-CG-GCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 11587 0.68 0.415006
Target:  5'- gCUGAUUGUCgacguacaaaUCCugaaacGCGCCGGCCGucacuucgcgcGCGAa -3'
miRNA:   3'- -GGCUAGCAG----------AGG------UGCGGCCGGC-----------UGCU- -5'
17207 3' -58.7 NC_004333.2 + 12193 0.71 0.300771
Target:  5'- uCCGG-CGUCUcauugccuucgaCCuuGCCGGCCGGCa- -3'
miRNA:   3'- -GGCUaGCAGA------------GGugCGGCCGGCUGcu -5'
17207 3' -58.7 NC_004333.2 + 12394 0.66 0.531561
Target:  5'- gCGAaCGUCaacCCGCGCgaGGCUGGCGc -3'
miRNA:   3'- gGCUaGCAGa--GGUGCGg-CCGGCUGCu -5'
17207 3' -58.7 NC_004333.2 + 12530 0.66 0.531561
Target:  5'- cCCGggCGU------GCCGGCCGACGAc -3'
miRNA:   3'- -GGCuaGCAgaggugCGGCCGGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.