miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17207 3' -58.7 NC_004333.2 + 42683 1.1 0.000439
Target:  5'- gCCGAUCGUCUCCACGCCGGCCGACGAg -3'
miRNA:   3'- -GGCUAGCAGAGGUGCGGCCGGCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 9053 0.77 0.12203
Target:  5'- gUCGGUCGcCgCCGCGCaCGGCCGcACGAu -3'
miRNA:   3'- -GGCUAGCaGaGGUGCG-GCCGGC-UGCU- -5'
17207 3' -58.7 NC_004333.2 + 28892 0.75 0.159486
Target:  5'- gCGAUCGcgCUCgGCGCaGGCCGGCGc -3'
miRNA:   3'- gGCUAGCa-GAGgUGCGgCCGGCUGCu -5'
17207 3' -58.7 NC_004333.2 + 23510 0.74 0.172605
Target:  5'- cCCGAUaCGUCgaCCGauCCGGCCGGCGGc -3'
miRNA:   3'- -GGCUA-GCAGa-GGUgcGGCCGGCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 9670 0.74 0.177188
Target:  5'- aCCGGcCGaugCCGCGCCGGCUGGCGc -3'
miRNA:   3'- -GGCUaGCagaGGUGCGGCCGGCUGCu -5'
17207 3' -58.7 NC_004333.2 + 22158 0.72 0.235089
Target:  5'- aCGAUUGcuUCUCCuugucgccgGCGgCGGCCGGCGGc -3'
miRNA:   3'- gGCUAGC--AGAGG---------UGCgGCCGGCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 37758 0.72 0.235089
Target:  5'- gCCGccaCG-CgCCGgGCCGGCCGACGAg -3'
miRNA:   3'- -GGCua-GCaGaGGUgCGGCCGGCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 26790 0.72 0.259797
Target:  5'- -gGGUCaagUUCCugGCCGGCgCGGCGGg -3'
miRNA:   3'- ggCUAGca-GAGGugCGGCCG-GCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 17374 0.72 0.266296
Target:  5'- cUCGGgcaUGUCgaggacgCUGCGCCGGCCGGCGu -3'
miRNA:   3'- -GGCUa--GCAGa------GGUGCGGCCGGCUGCu -5'
17207 3' -58.7 NC_004333.2 + 17606 0.71 0.276967
Target:  5'- aUCGAUCGUUgucaagacgccggCCGCGCCcggugccguGGCCGACa- -3'
miRNA:   3'- -GGCUAGCAGa------------GGUGCGG---------CCGGCUGcu -5'
17207 3' -58.7 NC_004333.2 + 27901 0.71 0.286582
Target:  5'- gCUGAaagCGaUCUgCACGCCGGCUGGCu- -3'
miRNA:   3'- -GGCUa--GC-AGAgGUGCGGCCGGCUGcu -5'
17207 3' -58.7 NC_004333.2 + 32850 0.71 0.296458
Target:  5'- cCCGGUCGcaaugcaaggugCCGCGCUuauGGCCGGCGGc -3'
miRNA:   3'- -GGCUAGCaga---------GGUGCGG---CCGGCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 17275 0.71 0.300049
Target:  5'- -aGAUUGcCUUCgacgugaACGCCGGCCGGCGc -3'
miRNA:   3'- ggCUAGCaGAGG-------UGCGGCCGGCUGCu -5'
17207 3' -58.7 NC_004333.2 + 12193 0.71 0.300771
Target:  5'- uCCGG-CGUCUcauugccuucgaCCuuGCCGGCCGGCa- -3'
miRNA:   3'- -GGCUaGCAGA------------GGugCGGCCGGCUGcu -5'
17207 3' -58.7 NC_004333.2 + 2082 0.7 0.314747
Target:  5'- gCCGugaCGUCgggcaucaUCCGCGCCGGCguaacgcUGACGAa -3'
miRNA:   3'- -GGCua-GCAG--------AGGUGCGGCCG-------GCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 33374 0.7 0.338592
Target:  5'- gCCGGUUGgCUCgAUG-CGGCCGACGc -3'
miRNA:   3'- -GGCUAGCaGAGgUGCgGCCGGCUGCu -5'
17207 3' -58.7 NC_004333.2 + 236 0.7 0.338592
Target:  5'- uCgGGUCGcC-CCACGCCGuGCCGuuCGAu -3'
miRNA:   3'- -GgCUAGCaGaGGUGCGGC-CGGCu-GCU- -5'
17207 3' -58.7 NC_004333.2 + 5119 0.69 0.371256
Target:  5'- gCCGA-CGUCggCCAacaGCCGGCCGcCu- -3'
miRNA:   3'- -GGCUaGCAGa-GGUg--CGGCCGGCuGcu -5'
17207 3' -58.7 NC_004333.2 + 2627 0.69 0.371256
Target:  5'- gCCGAUCGUCUCgCAU-UCGcGUCGugGAa -3'
miRNA:   3'- -GGCUAGCAGAG-GUGcGGC-CGGCugCU- -5'
17207 3' -58.7 NC_004333.2 + 30458 0.69 0.371256
Target:  5'- gCCGGUCGcUUCgACGUucggcaucgCGGUCGACGAu -3'
miRNA:   3'- -GGCUAGCaGAGgUGCG---------GCCGGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.