miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17207 3' -58.7 NC_004333.2 + 42683 1.1 0.000439
Target:  5'- gCCGAUCGUCUCCACGCCGGCCGACGAg -3'
miRNA:   3'- -GGCUAGCAGAGGUGCGGCCGGCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 20563 0.67 0.491138
Target:  5'- gCUGAUCGUCggCGCGUCGggucgcGCCGugGu -3'
miRNA:   3'- -GGCUAGCAGagGUGCGGC------CGGCugCu -5'
17207 3' -58.7 NC_004333.2 + 20514 0.67 0.501117
Target:  5'- gCCGGcCGcCgCCGCGCCGcucGCUGGCGGc -3'
miRNA:   3'- -GGCUaGCaGaGGUGCGGC---CGGCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 39672 0.66 0.572074
Target:  5'- gCCGAggcggcgCGcUUCCugGUCGGCCugccugcgccacuGACGAc -3'
miRNA:   3'- -GGCUa------GCaGAGGugCGGCCGG-------------CUGCU- -5'
17207 3' -58.7 NC_004333.2 + 17275 0.71 0.300049
Target:  5'- -aGAUUGcCUUCgacgugaACGCCGGCCGGCGc -3'
miRNA:   3'- ggCUAGCaGAGG-------UGCGGCCGGCUGCu -5'
17207 3' -58.7 NC_004333.2 + 12193 0.71 0.300771
Target:  5'- uCCGG-CGUCUcauugccuucgaCCuuGCCGGCCGGCa- -3'
miRNA:   3'- -GGCUaGCAGA------------GGugCGGCCGGCUGcu -5'
17207 3' -58.7 NC_004333.2 + 31216 0.69 0.379751
Target:  5'- gCCGGUUGg--UCAUGCCGGUCG-CGAc -3'
miRNA:   3'- -GGCUAGCagaGGUGCGGCCGGCuGCU- -5'
17207 3' -58.7 NC_004333.2 + 9294 0.69 0.388375
Target:  5'- aCGGUCGggUUUUCAcCGCCGGCCGGg-- -3'
miRNA:   3'- gGCUAGC--AGAGGU-GCGGCCGGCUgcu -5'
17207 3' -58.7 NC_004333.2 + 25292 0.68 0.442727
Target:  5'- uUCGG-CGUCgcaaCCGgGCCGacGCCGGCGAc -3'
miRNA:   3'- -GGCUaGCAGa---GGUgCGGC--CGGCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 47475 0.67 0.481252
Target:  5'- gCCGGcggCGaCUgCCgcgcugaacgagGCGCCGGCCGGCGc -3'
miRNA:   3'- -GGCUa--GCaGA-GG------------UGCGGCCGGCUGCu -5'
17207 3' -58.7 NC_004333.2 + 43315 0.68 0.452198
Target:  5'- gCCGAUCGag-CCgACGCCGGaaaucaUGACGGc -3'
miRNA:   3'- -GGCUAGCagaGG-UGCGGCCg-----GCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 11587 0.68 0.415006
Target:  5'- gCUGAUUGUCgacguacaaaUCCugaaacGCGCCGGCCGucacuucgcgcGCGAa -3'
miRNA:   3'- -GGCUAGCAG----------AGG------UGCGGCCGGC-----------UGCU- -5'
17207 3' -58.7 NC_004333.2 + 28892 0.75 0.159486
Target:  5'- gCGAUCGcgCUCgGCGCaGGCCGGCGc -3'
miRNA:   3'- gGCUAGCa-GAGgUGCGgCCGGCUGCu -5'
17207 3' -58.7 NC_004333.2 + 47807 0.67 0.471464
Target:  5'- gCUGAUCGUgCagCGCGCCGccuGCgGACGGc -3'
miRNA:   3'- -GGCUAGCA-GagGUGCGGC---CGgCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 22158 0.72 0.235089
Target:  5'- aCGAUUGcuUCUCCuugucgccgGCGgCGGCCGGCGGc -3'
miRNA:   3'- gGCUAGC--AGAGG---------UGCgGCCGGCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 24599 0.68 0.406005
Target:  5'- gCCGGUCGgaUuuGCGCuCGuGCCGAUGAa -3'
miRNA:   3'- -GGCUAGCagAggUGCG-GC-CGGCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 27029 0.67 0.481252
Target:  5'- gCGAUCGUCgaugaUGCGCaCGGCCuuuaccucGACGGg -3'
miRNA:   3'- gGCUAGCAGag---GUGCG-GCCGG--------CUGCU- -5'
17207 3' -58.7 NC_004333.2 + 10661 0.67 0.501117
Target:  5'- gUGA-CGUCacggUCGCGCCGGCCGGu-- -3'
miRNA:   3'- gGCUaGCAGa---GGUGCGGCCGGCUgcu -5'
17207 3' -58.7 NC_004333.2 + 17606 0.71 0.276967
Target:  5'- aUCGAUCGUUgucaagacgccggCCGCGCCcggugccguGGCCGACa- -3'
miRNA:   3'- -GGCUAGCAGa------------GGUGCGG---------CCGGCUGcu -5'
17207 3' -58.7 NC_004333.2 + 236 0.7 0.338592
Target:  5'- uCgGGUCGcC-CCACGCCGuGCCGuuCGAu -3'
miRNA:   3'- -GgCUAGCaGaGGUGCGGC-CGGCu-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.