miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17207 3' -58.7 NC_004333.2 + 236 0.7 0.338592
Target:  5'- uCgGGUCGcC-CCACGCCGuGCCGuuCGAu -3'
miRNA:   3'- -GgCUAGCaGaGGUGCGGC-CGGCu-GCU- -5'
17207 3' -58.7 NC_004333.2 + 27533 0.66 0.552224
Target:  5'- gUCGAUCGcaagugCCGCGCCGG--GGCGAa -3'
miRNA:   3'- -GGCUAGCaga---GGUGCGGCCggCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 20514 0.67 0.501117
Target:  5'- gCCGGcCGcCgCCGCGCCGcucGCUGGCGGc -3'
miRNA:   3'- -GGCUaGCaGaGGUGCGGC---CGGCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 12193 0.71 0.300771
Target:  5'- uCCGG-CGUCUcauugccuucgaCCuuGCCGGCCGGCa- -3'
miRNA:   3'- -GGCUaGCAGA------------GGugCGGCCGGCUGcu -5'
17207 3' -58.7 NC_004333.2 + 17275 0.71 0.300049
Target:  5'- -aGAUUGcCUUCgacgugaACGCCGGCCGGCGc -3'
miRNA:   3'- ggCUAGCaGAGG-------UGCGGCCGGCUGCu -5'
17207 3' -58.7 NC_004333.2 + 17606 0.71 0.276967
Target:  5'- aUCGAUCGUUgucaagacgccggCCGCGCCcggugccguGGCCGACa- -3'
miRNA:   3'- -GGCUAGCAGa------------GGUGCGG---------CCGGCUGcu -5'
17207 3' -58.7 NC_004333.2 + 12530 0.66 0.531561
Target:  5'- cCCGggCGU------GCCGGCCGACGAc -3'
miRNA:   3'- -GGCuaGCAgaggugCGGCCGGCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 15285 0.66 0.552224
Target:  5'- aCGGcCGUCUgaCCGgccugcUGCCGGCCGuGCGGa -3'
miRNA:   3'- gGCUaGCAGA--GGU------GCGGCCGGC-UGCU- -5'
17207 3' -58.7 NC_004333.2 + 2082 0.7 0.314747
Target:  5'- gCCGugaCGUCgggcaucaUCCGCGCCGGCguaacgcUGACGAa -3'
miRNA:   3'- -GGCua-GCAG--------AGGUGCGGCCG-------GCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 33374 0.7 0.338592
Target:  5'- gCCGGUUGgCUCgAUG-CGGCCGACGc -3'
miRNA:   3'- -GGCUAGCaGAGgUGCgGCCGGCUGCu -5'
17207 3' -58.7 NC_004333.2 + 13980 0.67 0.491138
Target:  5'- aCGAUCGcCacggcagCCGCcgcgcagcccguGCCGGCCGACu- -3'
miRNA:   3'- gGCUAGCaGa------GGUG------------CGGCCGGCUGcu -5'
17207 3' -58.7 NC_004333.2 + 25748 0.67 0.501117
Target:  5'- gCUGAUCagGUCgCCGCGUucgcgaCGGCCGGCa- -3'
miRNA:   3'- -GGCUAG--CAGaGGUGCG------GCCGGCUGcu -5'
17207 3' -58.7 NC_004333.2 + 22705 0.67 0.501117
Target:  5'- cCUGggCGUCaucaUCCAgCGCacaGGCgCGACGAa -3'
miRNA:   3'- -GGCuaGCAG----AGGU-GCGg--CCG-GCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 2761 0.67 0.501117
Target:  5'- gCCuGUCGg--CCGcCGCCGGCgCGACGc -3'
miRNA:   3'- -GGcUAGCagaGGU-GCGGCCG-GCUGCu -5'
17207 3' -58.7 NC_004333.2 + 12394 0.66 0.531561
Target:  5'- gCGAaCGUCaacCCGCGCgaGGCUGGCGc -3'
miRNA:   3'- gGCUaGCAGa--GGUGCGg-CCGGCUGCu -5'
17207 3' -58.7 NC_004333.2 + 39300 0.68 0.415006
Target:  5'- gCGGUCGagcaUUgCACGCagcuCGGCCGACGGg -3'
miRNA:   3'- gGCUAGCa---GAgGUGCG----GCCGGCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 2627 0.69 0.371256
Target:  5'- gCCGAUCGUCUCgCAU-UCGcGUCGugGAa -3'
miRNA:   3'- -GGCUAGCAGAG-GUGcGGC-CGGCugCU- -5'
17207 3' -58.7 NC_004333.2 + 30458 0.69 0.371256
Target:  5'- gCCGGUCGcUUCgACGUucggcaucgCGGUCGACGAu -3'
miRNA:   3'- -GGCUAGCaGAGgUGCG---------GCCGGCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 5119 0.69 0.371256
Target:  5'- gCCGA-CGUCggCCAacaGCCGGCCGcCu- -3'
miRNA:   3'- -GGCUaGCAGa-GGUg--CGGCCGGCuGcu -5'
17207 3' -58.7 NC_004333.2 + 25800 0.69 0.371256
Target:  5'- gCCGAcCGg--CCugcaGCUGGCCGGCGAg -3'
miRNA:   3'- -GGCUaGCagaGGug--CGGCCGGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.