miRNA display CGI


Results 21 - 40 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17208 3' -53.8 NC_004333.2 + 13841 0.68 0.666166
Target:  5'- uUCGAcgACG-GGCGCCGCgucgagcGCAUUGAGcGCg -3'
miRNA:   3'- -GGCU--UGCaCUGCGGCG-------UGUAGCUC-UG- -5'
17208 3' -53.8 NC_004333.2 + 13851 0.67 0.710972
Target:  5'- gUGGACGUGAgcaacuacaCGCCGCGCGagCGGcGCg -3'
miRNA:   3'- gGCUUGCACU---------GCGGCGUGUa-GCUcUG- -5'
17208 3' -53.8 NC_004333.2 + 14265 0.71 0.503702
Target:  5'- gCCGAGCGgcgGcACGCCuucgaGCAUCGGGAa -3'
miRNA:   3'- -GGCUUGCa--C-UGCGGcg---UGUAGCUCUg -5'
17208 3' -53.8 NC_004333.2 + 14335 0.7 0.578911
Target:  5'- cUCGAagGCGUGcCGCCGCugGcUCGAaagaGGCg -3'
miRNA:   3'- -GGCU--UGCACuGCGGCGugU-AGCU----CUG- -5'
17208 3' -53.8 NC_004333.2 + 14505 0.7 0.578911
Target:  5'- aCGAGCGUG-UGUgGCugAUCGAcuGGCg -3'
miRNA:   3'- gGCUUGCACuGCGgCGugUAGCU--CUG- -5'
17208 3' -53.8 NC_004333.2 + 15721 0.7 0.546257
Target:  5'- -gGGACGaUGACGCCGUgcuucACGUCGAaGCc -3'
miRNA:   3'- ggCUUGC-ACUGCGGCG-----UGUAGCUcUG- -5'
17208 3' -53.8 NC_004333.2 + 15880 0.66 0.793862
Target:  5'- gCGAGCGaGcCGCCGUGaccgcCAUCGuAGACg -3'
miRNA:   3'- gGCUUGCaCuGCGGCGU-----GUAGC-UCUG- -5'
17208 3' -53.8 NC_004333.2 + 17113 0.67 0.736637
Target:  5'- gCGAGCaUGACGCCauuggccugcagcguGCACGagUCGAGcGCg -3'
miRNA:   3'- gGCUUGcACUGCGG---------------CGUGU--AGCUC-UG- -5'
17208 3' -53.8 NC_004333.2 + 17500 0.69 0.611963
Target:  5'- cCCGGGCGacguuuUGAuCGUCaGCGCGUCGuGACc -3'
miRNA:   3'- -GGCUUGC------ACU-GCGG-CGUGUAGCuCUG- -5'
17208 3' -53.8 NC_004333.2 + 18167 0.69 0.634101
Target:  5'- cCCGAAUGcgGACGUgGCGCGcUCGcAGAg -3'
miRNA:   3'- -GGCUUGCa-CUGCGgCGUGU-AGC-UCUg -5'
17208 3' -53.8 NC_004333.2 + 18481 0.69 0.623028
Target:  5'- gCCGAucGCGaGGCGuuGCGCuUCG-GACg -3'
miRNA:   3'- -GGCU--UGCaCUGCggCGUGuAGCuCUG- -5'
17208 3' -53.8 NC_004333.2 + 19248 0.66 0.773936
Target:  5'- gCUGGACGUGACGaacaUGCACGcaucCGGcGACc -3'
miRNA:   3'- -GGCUUGCACUGCg---GCGUGUa---GCU-CUG- -5'
17208 3' -53.8 NC_004333.2 + 19557 0.66 0.763745
Target:  5'- gCCGGucgcACGgucGGCGCgGCACAagGGGAa -3'
miRNA:   3'- -GGCU----UGCa--CUGCGgCGUGUagCUCUg -5'
17208 3' -53.8 NC_004333.2 + 19780 0.67 0.742964
Target:  5'- aCGcACGgGAucgUGCCGCGCGUUGAGuGCg -3'
miRNA:   3'- gGCuUGCaCU---GCGGCGUGUAGCUC-UG- -5'
17208 3' -53.8 NC_004333.2 + 20246 0.68 0.678272
Target:  5'- aCUGGccuACGaucGCGCCGCACAUCGAc-- -3'
miRNA:   3'- -GGCU---UGCac-UGCGGCGUGUAGCUcug -5'
17208 3' -53.8 NC_004333.2 + 20642 0.66 0.773936
Target:  5'- gCGAGCGUcgcaacGGCGCUGCGCcaguggcagGAGGCg -3'
miRNA:   3'- gGCUUGCA------CUGCGGCGUGuag------CUCUG- -5'
17208 3' -53.8 NC_004333.2 + 21008 0.69 0.634101
Target:  5'- cCCGuGGCGUaGcCGCCGgGCGUCGGGuuGCa -3'
miRNA:   3'- -GGC-UUGCA-CuGCGGCgUGUAGCUC--UG- -5'
17208 3' -53.8 NC_004333.2 + 21022 0.68 0.678272
Target:  5'- aCGGGCGacgaaGugGCCGCGCAgugcugcuccUgGGGACu -3'
miRNA:   3'- gGCUUGCa----CugCGGCGUGU----------AgCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 21165 0.72 0.423421
Target:  5'- aCCGAcggcguuCGUGAaGCCGCACGUCGcauaguuGGCg -3'
miRNA:   3'- -GGCUu------GCACUgCGGCGUGUAGCu------CUG- -5'
17208 3' -53.8 NC_004333.2 + 21774 0.67 0.72173
Target:  5'- gCGcACGUG-CGCauagaGCGCGUCGAGcuGCu -3'
miRNA:   3'- gGCuUGCACuGCGg----CGUGUAGCUC--UG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.