miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17208 3' -53.8 NC_004333.2 + 332 0.67 0.753417
Target:  5'- cUCGGcgGCGUGACGaC-CACAUCGAacGGCa -3'
miRNA:   3'- -GGCU--UGCACUGCgGcGUGUAGCU--CUG- -5'
17208 3' -53.8 NC_004333.2 + 700 0.66 0.763745
Target:  5'- gCGAuCGUGcCGCCGC-CcgCGAG-Cg -3'
miRNA:   3'- gGCUuGCACuGCGGCGuGuaGCUCuG- -5'
17208 3' -53.8 NC_004333.2 + 1321 0.66 0.803574
Target:  5'- -gGAgcACGUcAUGCCGUugAUCGaAGGCa -3'
miRNA:   3'- ggCU--UGCAcUGCGGCGugUAGC-UCUG- -5'
17208 3' -53.8 NC_004333.2 + 2467 0.71 0.493284
Target:  5'- gCCGAACGaa--GCCGCGuuguUCGAGACg -3'
miRNA:   3'- -GGCUUGCacugCGGCGUgu--AGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 2873 0.68 0.700135
Target:  5'- gCGAAC--GACGUCGCAgCggCGAGGCu -3'
miRNA:   3'- gGCUUGcaCUGCGGCGU-GuaGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 2966 0.67 0.710972
Target:  5'- gCGAGCGUGACGCC-CGuCAaCGgaaugccuAGACg -3'
miRNA:   3'- gGCUUGCACUGCGGcGU-GUaGC--------UCUG- -5'
17208 3' -53.8 NC_004333.2 + 3029 0.66 0.773936
Target:  5'- aCGGGCGUcACGCuCGCGCAgcugCaGGGCu -3'
miRNA:   3'- gGCUUGCAcUGCG-GCGUGUa---GcUCUG- -5'
17208 3' -53.8 NC_004333.2 + 4059 0.69 0.634101
Target:  5'- aCGcAGCagcuaaACGCCGCcaACAUCGAGACg -3'
miRNA:   3'- gGC-UUGcac---UGCGGCG--UGUAGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 5260 0.66 0.773936
Target:  5'- gUCGAACGUGAUGCgauacgggggcgUGCuCAUC-AGGCg -3'
miRNA:   3'- -GGCUUGCACUGCG------------GCGuGUAGcUCUG- -5'
17208 3' -53.8 NC_004333.2 + 5664 0.69 0.589895
Target:  5'- cCUGAACGUGcGCaugcccgaugGCCGCACaAUCGAG-Cu -3'
miRNA:   3'- -GGCUUGCAC-UG----------CGGCGUG-UAGCUCuG- -5'
17208 3' -53.8 NC_004333.2 + 7503 0.78 0.189533
Target:  5'- gCCGucuCGUGcagcucuggGCGCCGCGCGUCGaAGGCa -3'
miRNA:   3'- -GGCuu-GCAC---------UGCGGCGUGUAGC-UCUG- -5'
17208 3' -53.8 NC_004333.2 + 8699 0.74 0.334693
Target:  5'- gCCGAGCucGACGUCGCGCAUCGGc-- -3'
miRNA:   3'- -GGCUUGcaCUGCGGCGUGUAGCUcug -5'
17208 3' -53.8 NC_004333.2 + 8706 0.75 0.303215
Target:  5'- gCCGAcCGUGACGCCGC---UCGAGuCc -3'
miRNA:   3'- -GGCUuGCACUGCGGCGuguAGCUCuG- -5'
17208 3' -53.8 NC_004333.2 + 8992 0.71 0.482965
Target:  5'- gCGAACGaagccGCGUCGCGCAUCGAcGCc -3'
miRNA:   3'- gGCUUGCac---UGCGGCGUGUAGCUcUG- -5'
17208 3' -53.8 NC_004333.2 + 9239 0.7 0.546257
Target:  5'- gCCGAACGggGGCGCCuCGCcgCGugcGGCa -3'
miRNA:   3'- -GGCUUGCa-CUGCGGcGUGuaGCu--CUG- -5'
17208 3' -53.8 NC_004333.2 + 9337 0.67 0.753417
Target:  5'- gCCGAAUccGcagaaggcuAUGCCGCACGcggCGAGGCg -3'
miRNA:   3'- -GGCUUGcaC---------UGCGGCGUGUa--GCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 9427 0.68 0.656232
Target:  5'- -aGAAgGcccGACGCCGCGCGcCGAcGACg -3'
miRNA:   3'- ggCUUgCa--CUGCGGCGUGUaGCU-CUG- -5'
17208 3' -53.8 NC_004333.2 + 11959 0.67 0.742964
Target:  5'- gUCGAGCGccuUGCaCGCGCGUCGAcGAUc -3'
miRNA:   3'- -GGCUUGCacuGCG-GCGUGUAGCU-CUG- -5'
17208 3' -53.8 NC_004333.2 + 13605 0.66 0.773936
Target:  5'- gCCGccGGCGgcaACGCCGCgagcACGUCG-GACg -3'
miRNA:   3'- -GGC--UUGCac-UGCGGCG----UGUAGCuCUG- -5'
17208 3' -53.8 NC_004333.2 + 13748 0.73 0.413929
Target:  5'- gUCGAGCGcguagGACGCCGCGCGccgcUCGcgcGGCg -3'
miRNA:   3'- -GGCUUGCa----CUGCGGCGUGU----AGCu--CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.