miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17208 3' -53.8 NC_004333.2 + 43067 1.12 0.000851
Target:  5'- gCCGAACGUGACGCCGCACAUCGAGACg -3'
miRNA:   3'- -GGCUUGCACUGCGGCGUGUAGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 7503 0.78 0.189533
Target:  5'- gCCGucuCGUGcagcucuggGCGCCGCGCGUCGaAGGCa -3'
miRNA:   3'- -GGCuu-GCAC---------UGCGGCGUGUAGC-UCUG- -5'
17208 3' -53.8 NC_004333.2 + 38394 0.78 0.199497
Target:  5'- gCCG-GCGUGACGCCGgcCACGgucaagacggcgaUCGAGACg -3'
miRNA:   3'- -GGCuUGCACUGCGGC--GUGU-------------AGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 29994 0.77 0.233378
Target:  5'- gCCGAGCGcgagcaccaugcGGCGCCGCuCGUCGGGAUc -3'
miRNA:   3'- -GGCUUGCa-----------CUGCGGCGuGUAGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 8706 0.75 0.303215
Target:  5'- gCCGAcCGUGACGCCGC---UCGAGuCc -3'
miRNA:   3'- -GGCUuGCACUGCGGCGuguAGCUCuG- -5'
17208 3' -53.8 NC_004333.2 + 31001 0.75 0.303215
Target:  5'- gCCGGACGUGAuCGUCGCgaugaaggcaaGCGUCGAcGCg -3'
miRNA:   3'- -GGCUUGCACU-GCGGCG-----------UGUAGCUcUG- -5'
17208 3' -53.8 NC_004333.2 + 8699 0.74 0.334693
Target:  5'- gCCGAGCucGACGUCGCGCAUCGGc-- -3'
miRNA:   3'- -GGCUUGcaCUGCGGCGUGUAGCUcug -5'
17208 3' -53.8 NC_004333.2 + 25275 0.73 0.368497
Target:  5'- gCGGGCGUcGACGUcgaguCGCGCAgcgaguUCGAGACg -3'
miRNA:   3'- gGCUUGCA-CUGCG-----GCGUGU------AGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 36336 0.73 0.386255
Target:  5'- aCGucGCGUGuCGCUGCAUGUCGuGGCu -3'
miRNA:   3'- gGCu-UGCACuGCGGCGUGUAGCuCUG- -5'
17208 3' -53.8 NC_004333.2 + 13748 0.73 0.413929
Target:  5'- gUCGAGCGcguagGACGCCGCGCGccgcUCGcgcGGCg -3'
miRNA:   3'- -GGCUUGCa----CUGCGGCGUGU----AGCu--CUG- -5'
17208 3' -53.8 NC_004333.2 + 21165 0.72 0.423421
Target:  5'- aCCGAcggcguuCGUGAaGCCGCACGUCGcauaguuGGCg -3'
miRNA:   3'- -GGCUu------GCACUgCGGCGUGUAGCu------CUG- -5'
17208 3' -53.8 NC_004333.2 + 37257 0.72 0.427254
Target:  5'- aCCGGcgcgcgucgugagcgGCGUGuCGCCGCGCugCGGGAUg -3'
miRNA:   3'- -GGCU---------------UGCACuGCGGCGUGuaGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 47181 0.72 0.452659
Target:  5'- -aGAACGcGcUGCCGCGCAgcaCGAGGCa -3'
miRNA:   3'- ggCUUGCaCuGCGGCGUGUa--GCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 8992 0.71 0.482965
Target:  5'- gCGAACGaagccGCGUCGCGCAUCGAcGCc -3'
miRNA:   3'- gGCUUGCac---UGCGGCGUGUAGCUcUG- -5'
17208 3' -53.8 NC_004333.2 + 2467 0.71 0.493284
Target:  5'- gCCGAACGaa--GCCGCGuuguUCGAGACg -3'
miRNA:   3'- -GGCUUGCacugCGGCGUgu--AGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 14265 0.71 0.503702
Target:  5'- gCCGAGCGgcgGcACGCCuucgaGCAUCGGGAa -3'
miRNA:   3'- -GGCUUGCa--C-UGCGGcg---UGUAGCUCUg -5'
17208 3' -53.8 NC_004333.2 + 15721 0.7 0.546257
Target:  5'- -gGGACGaUGACGCCGUgcuucACGUCGAaGCc -3'
miRNA:   3'- ggCUUGC-ACUGCGGCG-----UGUAGCUcUG- -5'
17208 3' -53.8 NC_004333.2 + 9239 0.7 0.546257
Target:  5'- gCCGAACGggGGCGCCuCGCcgCGugcGGCa -3'
miRNA:   3'- -GGCUUGCa-CUGCGGcGUGuaGCu--CUG- -5'
17208 3' -53.8 NC_004333.2 + 23008 0.7 0.554913
Target:  5'- gCCGAACGguucgaccuauACGCUGCACAacUCGAGcgGCa -3'
miRNA:   3'- -GGCUUGCac---------UGCGGCGUGU--AGCUC--UG- -5'
17208 3' -53.8 NC_004333.2 + 40097 0.7 0.578911
Target:  5'- uCCGcgcCGUGGCGCCGCGCGaguucCGuGAUc -3'
miRNA:   3'- -GGCuu-GCACUGCGGCGUGUa----GCuCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.