miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17208 3' -53.8 NC_004333.2 + 43067 1.12 0.000851
Target:  5'- gCCGAACGUGACGCCGCACAUCGAGACg -3'
miRNA:   3'- -GGCUUGCACUGCGGCGUGUAGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 20246 0.68 0.678272
Target:  5'- aCUGGccuACGaucGCGCCGCACAUCGAc-- -3'
miRNA:   3'- -GGCU---UGCac-UGCGGCGUGUAGCUcug -5'
17208 3' -53.8 NC_004333.2 + 2873 0.68 0.700135
Target:  5'- gCGAAC--GACGUCGCAgCggCGAGGCu -3'
miRNA:   3'- gGCUUGcaCUGCGGCGU-GuaGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 22301 0.66 0.803574
Target:  5'- aCGAACGUccaauCGUCGgACAgaccCGAGGCg -3'
miRNA:   3'- gGCUUGCAcu---GCGGCgUGUa---GCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 13748 0.73 0.413929
Target:  5'- gUCGAGCGcguagGACGCCGCGCGccgcUCGcgcGGCg -3'
miRNA:   3'- -GGCUUGCa----CUGCGGCGUGU----AGCu--CUG- -5'
17208 3' -53.8 NC_004333.2 + 47181 0.72 0.452659
Target:  5'- -aGAACGcGcUGCCGCGCAgcaCGAGGCa -3'
miRNA:   3'- ggCUUGCaCuGCGGCGUGUa--GCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 14265 0.71 0.503702
Target:  5'- gCCGAGCGgcgGcACGCCuucgaGCAUCGGGAa -3'
miRNA:   3'- -GGCUUGCa--C-UGCGGcg---UGUAGCUCUg -5'
17208 3' -53.8 NC_004333.2 + 9239 0.7 0.546257
Target:  5'- gCCGAACGggGGCGCCuCGCcgCGugcGGCa -3'
miRNA:   3'- -GGCUUGCa-CUGCGGcGUGuaGCu--CUG- -5'
17208 3' -53.8 NC_004333.2 + 47475 0.69 0.634101
Target:  5'- gCCG-GCGgcGACuGCCGCGCugaaCGAGGCg -3'
miRNA:   3'- -GGCuUGCa-CUG-CGGCGUGua--GCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 13841 0.68 0.666166
Target:  5'- uUCGAcgACG-GGCGCCGCgucgagcGCAUUGAGcGCg -3'
miRNA:   3'- -GGCU--UGCaCUGCGGCG-------UGUAGCUC-UG- -5'
17208 3' -53.8 NC_004333.2 + 39076 0.68 0.645173
Target:  5'- gCGAcuCGUG-CGCCGUGCGUCGGcACu -3'
miRNA:   3'- gGCUu-GCACuGCGGCGUGUAGCUcUG- -5'
17208 3' -53.8 NC_004333.2 + 34735 0.69 0.623028
Target:  5'- gCCGcccuuaguuGACGUGACGCCGC-CcgCGAu-- -3'
miRNA:   3'- -GGC---------UUGCACUGCGGCGuGuaGCUcug -5'
17208 3' -53.8 NC_004333.2 + 38394 0.78 0.199497
Target:  5'- gCCG-GCGUGACGCCGgcCACGgucaagacggcgaUCGAGACg -3'
miRNA:   3'- -GGCuUGCACUGCGGC--GUGU-------------AGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 26055 0.68 0.656232
Target:  5'- gCCGGAUuugccaGUGGCGCCGCAg--CGGcGGCg -3'
miRNA:   3'- -GGCUUG------CACUGCGGCGUguaGCU-CUG- -5'
17208 3' -53.8 NC_004333.2 + 29994 0.77 0.233378
Target:  5'- gCCGAGCGcgagcaccaugcGGCGCCGCuCGUCGGGAUc -3'
miRNA:   3'- -GGCUUGCa-----------CUGCGGCGuGUAGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 15721 0.7 0.546257
Target:  5'- -gGGACGaUGACGCCGUgcuucACGUCGAaGCc -3'
miRNA:   3'- ggCUUGC-ACUGCGGCG-----UGUAGCUcUG- -5'
17208 3' -53.8 NC_004333.2 + 45519 0.68 0.656232
Target:  5'- gCGGGCGgGGCGCCcCGCAUuCGAG-Cg -3'
miRNA:   3'- gGCUUGCaCUGCGGcGUGUA-GCUCuG- -5'
17208 3' -53.8 NC_004333.2 + 21022 0.68 0.678272
Target:  5'- aCGGGCGacgaaGugGCCGCGCAgugcugcuccUgGGGACu -3'
miRNA:   3'- gGCUUGCa----CugCGGCGUGU----------AgCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 8706 0.75 0.303215
Target:  5'- gCCGAcCGUGACGCCGC---UCGAGuCc -3'
miRNA:   3'- -GGCUuGCACUGCGGCGuguAGCUCuG- -5'
17208 3' -53.8 NC_004333.2 + 2467 0.71 0.493284
Target:  5'- gCCGAACGaa--GCCGCGuuguUCGAGACg -3'
miRNA:   3'- -GGCUUGCacugCGGCGUgu--AGCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.