miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17208 5' -56 NC_004333.2 + 3288 0.67 0.567971
Target:  5'- -cGUcAUCGGgGCG-GGCGGCGCgcCGGg -3'
miRNA:   3'- cuCA-UAGCCgCGCuCCGUUGCGa-GCU- -5'
17208 5' -56 NC_004333.2 + 4237 0.66 0.611963
Target:  5'- cGAGaacAUCGGCGUGAGGaugccgcgcACGUUCGu -3'
miRNA:   3'- -CUCa--UAGCCGCGCUCCgu-------UGCGAGCu -5'
17208 5' -56 NC_004333.2 + 5553 0.71 0.342927
Target:  5'- -cGgcUUGGCGCGAGuGCAGaccguucaGCUCGAu -3'
miRNA:   3'- cuCauAGCCGCGCUC-CGUUg-------CGAGCU- -5'
17208 5' -56 NC_004333.2 + 6824 0.68 0.535499
Target:  5'- cGAGg--CGcGCGacCGGGGCGccgugGCGCUCGAa -3'
miRNA:   3'- -CUCauaGC-CGC--GCUCCGU-----UGCGAGCU- -5'
17208 5' -56 NC_004333.2 + 13825 0.71 0.326605
Target:  5'- cGAG---CGGCGCGcGGCGuccuacGCGCUCGAc -3'
miRNA:   3'- -CUCauaGCCGCGCuCCGU------UGCGAGCU- -5'
17208 5' -56 NC_004333.2 + 13933 0.66 0.600915
Target:  5'- -----gCGGCGCGGcGCGcucaauGCGCUCGAc -3'
miRNA:   3'- cucauaGCCGCGCUcCGU------UGCGAGCU- -5'
17208 5' -56 NC_004333.2 + 18494 0.67 0.557084
Target:  5'- cGGUGUCGacgccgccgauCGCGAGGCGuuGCGCUuCGGa -3'
miRNA:   3'- cUCAUAGCc----------GCGCUCCGU--UGCGA-GCU- -5'
17208 5' -56 NC_004333.2 + 19493 0.71 0.351306
Target:  5'- ---gAUCGGCGCuggcgcgcuGGCGGCGCUCGu -3'
miRNA:   3'- cucaUAGCCGCGcu-------CCGUUGCGAGCu -5'
17208 5' -56 NC_004333.2 + 22004 0.67 0.557084
Target:  5'- ---cGUCGGCGCGAauCAGCGCgCGGg -3'
miRNA:   3'- cucaUAGCCGCGCUccGUUGCGaGCU- -5'
17208 5' -56 NC_004333.2 + 22870 0.66 0.600915
Target:  5'- cGGcgAUCGGCGCGAucGUAcugGCGCUCGu -3'
miRNA:   3'- cUCa-UAGCCGCGCUc-CGU---UGCGAGCu -5'
17208 5' -56 NC_004333.2 + 27314 0.8 0.084037
Target:  5'- cGAGgcGUCGGCGC-AGGCAGaCGCUCGAu -3'
miRNA:   3'- -CUCa-UAGCCGCGcUCCGUU-GCGAGCU- -5'
17208 5' -56 NC_004333.2 + 28415 0.68 0.514215
Target:  5'- --cUAUCGGCGCGAuGGUAcgaugcgcAUGUUCGGu -3'
miRNA:   3'- cucAUAGCCGCGCU-CCGU--------UGCGAGCU- -5'
17208 5' -56 NC_004333.2 + 29121 0.67 0.589895
Target:  5'- ----cUCGGCGCGAucgugGGCGGCGCg--- -3'
miRNA:   3'- cucauAGCCGCGCU-----CCGUUGCGagcu -5'
17208 5' -56 NC_004333.2 + 30058 0.67 0.545178
Target:  5'- uGGUGcucgcgcUCGGCGcCGGuGGCAgcgcggccGCGCUCGGc -3'
miRNA:   3'- cUCAU-------AGCCGC-GCU-CCGU--------UGCGAGCU- -5'
17208 5' -56 NC_004333.2 + 30374 0.73 0.281135
Target:  5'- uGGUGUCgcaGGCGCGAcGGCGGCcaGCUCGc -3'
miRNA:   3'- cUCAUAG---CCGCGCU-CCGUUG--CGAGCu -5'
17208 5' -56 NC_004333.2 + 30500 0.72 0.28835
Target:  5'- -----gUGGCGCGAGGCAGuCGCUaCGGc -3'
miRNA:   3'- cucauaGCCGCGCUCCGUU-GCGA-GCU- -5'
17208 5' -56 NC_004333.2 + 31248 0.66 0.611963
Target:  5'- cGAGUA-CGGCGCGccgucuGGGCGGCGaugccaaggCGGg -3'
miRNA:   3'- -CUCAUaGCCGCGC------UCCGUUGCga-------GCU- -5'
17208 5' -56 NC_004333.2 + 35086 0.69 0.442789
Target:  5'- uGGUGuUCGGCGCGAccGGCAAUGgUaCGGc -3'
miRNA:   3'- cUCAU-AGCCGCGCU--CCGUUGCgA-GCU- -5'
17208 5' -56 NC_004333.2 + 37101 0.66 0.611963
Target:  5'- cGAGgacGUCGGgcagcUGCGGGGCGugcucgaaGCGCUCa- -3'
miRNA:   3'- -CUCa--UAGCC-----GCGCUCCGU--------UGCGAGcu -5'
17208 5' -56 NC_004333.2 + 37316 0.67 0.589895
Target:  5'- ---aGUCGGuCGCGGcGGUGcucgacGCGCUCGAa -3'
miRNA:   3'- cucaUAGCC-GCGCU-CCGU------UGCGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.