miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17208 5' -56 NC_004333.2 + 5553 0.71 0.342927
Target:  5'- -cGgcUUGGCGCGAGuGCAGaccguucaGCUCGAu -3'
miRNA:   3'- cuCauAGCCGCGCUC-CGUUg-------CGAGCU- -5'
17208 5' -56 NC_004333.2 + 43102 1.09 0.000754
Target:  5'- cGAGUAUCGGCGCGAGGCAACGCUCGAc -3'
miRNA:   3'- -CUCAUAGCCGCGCUCCGUUGCGAGCU- -5'
17208 5' -56 NC_004333.2 + 37101 0.66 0.611963
Target:  5'- cGAGgacGUCGGgcagcUGCGGGGCGugcucgaaGCGCUCa- -3'
miRNA:   3'- -CUCa--UAGCC-----GCGCUCCGU--------UGCGAGcu -5'
17208 5' -56 NC_004333.2 + 22870 0.66 0.600915
Target:  5'- cGGcgAUCGGCGCGAucGUAcugGCGCUCGu -3'
miRNA:   3'- cUCa-UAGCCGCGCUc-CGU---UGCGAGCu -5'
17208 5' -56 NC_004333.2 + 47670 0.67 0.589895
Target:  5'- cGAGUucAUCGGUGCGcucGGCAAgGCgaaguaCGAc -3'
miRNA:   3'- -CUCA--UAGCCGCGCu--CCGUUgCGa-----GCU- -5'
17208 5' -56 NC_004333.2 + 22004 0.67 0.557084
Target:  5'- ---cGUCGGCGCGAauCAGCGCgCGGg -3'
miRNA:   3'- cucaUAGCCGCGCUccGUUGCGaGCU- -5'
17208 5' -56 NC_004333.2 + 41735 0.72 0.310865
Target:  5'- cGAGgagAUCGGCGCG-GGCGacucgcGCGC-CGGg -3'
miRNA:   3'- -CUCa--UAGCCGCGCuCCGU------UGCGaGCU- -5'
17208 5' -56 NC_004333.2 + 48002 0.66 0.656232
Target:  5'- ---cAUCGGCGCGuucuGGCuugcccgcGCGCUCu- -3'
miRNA:   3'- cucaUAGCCGCGCu---CCGu-------UGCGAGcu -5'
17208 5' -56 NC_004333.2 + 37316 0.67 0.589895
Target:  5'- ---aGUCGGuCGCGGcGGUGcucgacGCGCUCGAa -3'
miRNA:   3'- cucaUAGCC-GCGCU-CCGU------UGCGAGCU- -5'
17208 5' -56 NC_004333.2 + 39222 0.68 0.514215
Target:  5'- ---cGUCGGC-CGAGcugcguGCAAUGCUCGAc -3'
miRNA:   3'- cucaUAGCCGcGCUC------CGUUGCGAGCU- -5'
17208 5' -56 NC_004333.2 + 19493 0.71 0.351306
Target:  5'- ---gAUCGGCGCuggcgcgcuGGCGGCGCUCGu -3'
miRNA:   3'- cucaUAGCCGCGcu-------CCGUUGCGAGCu -5'
17208 5' -56 NC_004333.2 + 37697 0.69 0.452659
Target:  5'- -----cCGGCGCGuGGCGGCucaauggccuGCUCGAu -3'
miRNA:   3'- cucauaGCCGCGCuCCGUUG----------CGAGCU- -5'
17208 5' -56 NC_004333.2 + 4237 0.66 0.611963
Target:  5'- cGAGaacAUCGGCGUGAGGaugccgcgcACGUUCGu -3'
miRNA:   3'- -CUCa--UAGCCGCGCUCCgu-------UGCGAGCu -5'
17208 5' -56 NC_004333.2 + 42742 0.66 0.611963
Target:  5'- gGAGacgAUCGGCGCuGuuGCGGgcUGCUCGAc -3'
miRNA:   3'- -CUCa--UAGCCGCG-CucCGUU--GCGAGCU- -5'
17208 5' -56 NC_004333.2 + 29121 0.67 0.589895
Target:  5'- ----cUCGGCGCGAucgugGGCGGCGCg--- -3'
miRNA:   3'- cucauAGCCGCGCU-----CCGUUGCGagcu -5'
17208 5' -56 NC_004333.2 + 35086 0.69 0.442789
Target:  5'- uGGUGuUCGGCGCGAccGGCAAUGgUaCGGc -3'
miRNA:   3'- cUCAU-AGCCGCGCU--CCGUUGCgA-GCU- -5'
17208 5' -56 NC_004333.2 + 44990 0.69 0.442789
Target:  5'- ----uUCGGCGCGc-GCGACGCaUCGAg -3'
miRNA:   3'- cucauAGCCGCGCucCGUUGCG-AGCU- -5'
17208 5' -56 NC_004333.2 + 43988 0.69 0.452659
Target:  5'- uGGGUAUCGGUGCGcuacGUGGCGUUUGGu -3'
miRNA:   3'- -CUCAUAGCCGCGCuc--CGUUGCGAGCU- -5'
17208 5' -56 NC_004333.2 + 28415 0.68 0.514215
Target:  5'- --cUAUCGGCGCGAuGGUAcgaugcgcAUGUUCGGu -3'
miRNA:   3'- cucAUAGCCGCGCU-CCGU--------UGCGAGCU- -5'
17208 5' -56 NC_004333.2 + 38950 0.67 0.567971
Target:  5'- -----gCGGCGCGggugcgcggacGGGCGGCGUUCGu -3'
miRNA:   3'- cucauaGCCGCGC-----------UCCGUUGCGAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.