Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17210 | 3' | -61.4 | NC_004333.2 | + | 43865 | 1.07 | 0.000236 |
Target: 5'- gCAGCACCCGGUGCUCGCGGCACUGCAa -3' miRNA: 3'- -GUCGUGGGCCACGAGCGCCGUGACGU- -5' |
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17210 | 3' | -61.4 | NC_004333.2 | + | 46990 | 0.8 | 0.035036 |
Target: 5'- aGGCuuCgCGGcGCUCGCGGCGCUGCAg -3' miRNA: 3'- gUCGu-GgGCCaCGAGCGCCGUGACGU- -5' |
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17210 | 3' | -61.4 | NC_004333.2 | + | 24523 | 0.75 | 0.080152 |
Target: 5'- aCAGCaacaGCCCGGU-CUUGCuGGCGCUGCu -3' miRNA: 3'- -GUCG----UGGGCCAcGAGCG-CCGUGACGu -5' |
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17210 | 3' | -61.4 | NC_004333.2 | + | 25953 | 0.74 | 0.09222 |
Target: 5'- gCGGCGCuuGGcGCUCGCGcaccaaGCGCUGCu -3' miRNA: 3'- -GUCGUGggCCaCGAGCGC------CGUGACGu -5' |
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17210 | 3' | -61.4 | NC_004333.2 | + | 16656 | 0.73 | 0.103097 |
Target: 5'- aCAGCacuucgaccuGCCCGGUGCUgcaccgCGCGGUgcggaagcaccGCUGCAa -3' miRNA: 3'- -GUCG----------UGGGCCACGA------GCGCCG-----------UGACGU- -5' |
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17210 | 3' | -61.4 | NC_004333.2 | + | 15366 | 0.73 | 0.105999 |
Target: 5'- aAGCGCCCGGUGCUgaugcugacCGCGccgccgcaGCACgGCAa -3' miRNA: 3'- gUCGUGGGCCACGA---------GCGC--------CGUGaCGU- -5' |
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17210 | 3' | -61.4 | NC_004333.2 | + | 30069 | 0.73 | 0.115173 |
Target: 5'- gCGGCGCCgcaUGGUGCUCGCgcucGGCGCcggugGCAg -3' miRNA: 3'- -GUCGUGG---GCCACGAGCG----CCGUGa----CGU- -5' |
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17210 | 3' | -61.4 | NC_004333.2 | + | 8653 | 0.72 | 0.12856 |
Target: 5'- gCGGCGCCCGGcuUGCUCGUGaCGgUGCc -3' miRNA: 3'- -GUCGUGGGCC--ACGAGCGCcGUgACGu -5' |
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17210 | 3' | -61.4 | NC_004333.2 | + | 17630 | 0.71 | 0.155488 |
Target: 5'- -cGCGCCCGGUGC-CGUGGCcgacACguucGCGa -3' miRNA: 3'- guCGUGGGCCACGaGCGCCG----UGa---CGU- -5' |
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17210 | 3' | -61.4 | NC_004333.2 | + | 13972 | 0.71 | 0.168524 |
Target: 5'- gCGGCGgCCGGUGCgCGCGa-GCUGCGc -3' miRNA: 3'- -GUCGUgGGCCACGaGCGCcgUGACGU- -5' |
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17210 | 3' | -61.4 | NC_004333.2 | + | 36078 | 0.69 | 0.202801 |
Target: 5'- gAGCugGCCC-GUGa-CGCGGCGCUGCGc -3' miRNA: 3'- gUCG--UGGGcCACgaGCGCCGUGACGU- -5' |
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17210 | 3' | -61.4 | NC_004333.2 | + | 18604 | 0.69 | 0.202801 |
Target: 5'- -cGCACCCGGguUGC-CGcCGGCugcgaaggccGCUGCAg -3' miRNA: 3'- guCGUGGGCC--ACGaGC-GCCG----------UGACGU- -5' |
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17210 | 3' | -61.4 | NC_004333.2 | + | 18194 | 0.69 | 0.219262 |
Target: 5'- -uGCGCUCGucGUGCgCGCGGCAUcGCAa -3' miRNA: 3'- guCGUGGGC--CACGaGCGCCGUGaCGU- -5' |
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17210 | 3' | -61.4 | NC_004333.2 | + | 39255 | 0.69 | 0.219262 |
Target: 5'- -uGCugCCGGUGCa-GCGcGCGCaGCAc -3' miRNA: 3'- guCGugGGCCACGagCGC-CGUGaCGU- -5' |
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17210 | 3' | -61.4 | NC_004333.2 | + | 19274 | 0.68 | 0.24922 |
Target: 5'- cCGGCgACCUGGUgcuGCUCGCGaGCAa-GCAc -3' miRNA: 3'- -GUCG-UGGGCCA---CGAGCGC-CGUgaCGU- -5' |
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17210 | 3' | -61.4 | NC_004333.2 | + | 30996 | 0.68 | 0.262121 |
Target: 5'- -uGUugCgGGcUGCUCGCGcgguagguGCGCUGCAg -3' miRNA: 3'- guCGugGgCC-ACGAGCGC--------CGUGACGU- -5' |
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17210 | 3' | -61.4 | NC_004333.2 | + | 45030 | 0.68 | 0.262121 |
Target: 5'- -cGCGCgUGGcGCUgGCGGCGC-GCAa -3' miRNA: 3'- guCGUGgGCCaCGAgCGCCGUGaCGU- -5' |
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17210 | 3' | -61.4 | NC_004333.2 | + | 23593 | 0.68 | 0.262121 |
Target: 5'- gCGGCuACCCGaaaggCGCGGUGCUGCAa -3' miRNA: 3'- -GUCG-UGGGCcacgaGCGCCGUGACGU- -5' |
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17210 | 3' | -61.4 | NC_004333.2 | + | 48165 | 0.68 | 0.262121 |
Target: 5'- -cGCGCCCGGUugccgccugcGcCUCGuCGGCACcgaGCAg -3' miRNA: 3'- guCGUGGGCCA----------C-GAGC-GCCGUGa--CGU- -5' |
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17210 | 3' | -61.4 | NC_004333.2 | + | 18541 | 0.67 | 0.275558 |
Target: 5'- gCGGCaACCCgGGUGCggcaGcCGGCGCgGCGg -3' miRNA: 3'- -GUCG-UGGG-CCACGag--C-GCCGUGaCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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