Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17210 | 3' | -61.4 | NC_004333.2 | + | 18541 | 0.67 | 0.275558 |
Target: 5'- gCGGCaACCCgGGUGCggcaGcCGGCGCgGCGg -3' miRNA: 3'- -GUCG-UGGG-CCACGag--C-GCCGUGaCGU- -5' |
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17210 | 3' | -61.4 | NC_004333.2 | + | 16656 | 0.73 | 0.103097 |
Target: 5'- aCAGCacuucgaccuGCCCGGUGCUgcaccgCGCGGUgcggaagcaccGCUGCAa -3' miRNA: 3'- -GUCG----------UGGGCCACGA------GCGCCG-----------UGACGU- -5' |
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17210 | 3' | -61.4 | NC_004333.2 | + | 8653 | 0.72 | 0.12856 |
Target: 5'- gCGGCGCCCGGcuUGCUCGUGaCGgUGCc -3' miRNA: 3'- -GUCGUGGGCC--ACGAGCGCcGUgACGu -5' |
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17210 | 3' | -61.4 | NC_004333.2 | + | 17630 | 0.71 | 0.155488 |
Target: 5'- -cGCGCCCGGUGC-CGUGGCcgacACguucGCGa -3' miRNA: 3'- guCGUGGGCCACGaGCGCCG----UGa---CGU- -5' |
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17210 | 3' | -61.4 | NC_004333.2 | + | 13972 | 0.71 | 0.168524 |
Target: 5'- gCGGCGgCCGGUGCgCGCGa-GCUGCGc -3' miRNA: 3'- -GUCGUgGGCCACGaGCGCcgUGACGU- -5' |
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17210 | 3' | -61.4 | NC_004333.2 | + | 36078 | 0.69 | 0.202801 |
Target: 5'- gAGCugGCCC-GUGa-CGCGGCGCUGCGc -3' miRNA: 3'- gUCG--UGGGcCACgaGCGCCGUGACGU- -5' |
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17210 | 3' | -61.4 | NC_004333.2 | + | 18194 | 0.69 | 0.219262 |
Target: 5'- -uGCGCUCGucGUGCgCGCGGCAUcGCAa -3' miRNA: 3'- guCGUGGGC--CACGaGCGCCGUGaCGU- -5' |
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17210 | 3' | -61.4 | NC_004333.2 | + | 19274 | 0.68 | 0.24922 |
Target: 5'- cCGGCgACCUGGUgcuGCUCGCGaGCAa-GCAc -3' miRNA: 3'- -GUCG-UGGGCCA---CGAGCGC-CGUgaCGU- -5' |
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17210 | 3' | -61.4 | NC_004333.2 | + | 30996 | 0.68 | 0.262121 |
Target: 5'- -uGUugCgGGcUGCUCGCGcgguagguGCGCUGCAg -3' miRNA: 3'- guCGugGgCC-ACGAGCGC--------CGUGACGU- -5' |
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17210 | 3' | -61.4 | NC_004333.2 | + | 43865 | 1.07 | 0.000236 |
Target: 5'- gCAGCACCCGGUGCUCGCGGCACUGCAa -3' miRNA: 3'- -GUCGUGGGCCACGAGCGCCGUGACGU- -5' |
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17210 | 3' | -61.4 | NC_004333.2 | + | 13631 | 0.66 | 0.334807 |
Target: 5'- gAGCACUUcGUGCaucgCGCGGUACUcggGCAg -3' miRNA: 3'- gUCGUGGGcCACGa---GCGCCGUGA---CGU- -5' |
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17210 | 3' | -61.4 | NC_004333.2 | + | 12286 | 0.66 | 0.326916 |
Target: 5'- aCGGCACCggCGGcGCgcaUUGCGGCGucCUGCGc -3' miRNA: 3'- -GUCGUGG--GCCaCG---AGCGCCGU--GACGU- -5' |
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17210 | 3' | -61.4 | NC_004333.2 | + | 25875 | 0.67 | 0.282482 |
Target: 5'- gCAGCGCuuGGUGCgcgagCGCcaaGCGCcGCGc -3' miRNA: 3'- -GUCGUGggCCACGa----GCGc--CGUGaCGU- -5' |
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17210 | 3' | -61.4 | NC_004333.2 | + | 6658 | 0.66 | 0.334807 |
Target: 5'- -cGCGCUCGGcgcGCUCGagcaGGCGC-GCAu -3' miRNA: 3'- guCGUGGGCCa--CGAGCg---CCGUGaCGU- -5' |
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17210 | 3' | -61.4 | NC_004333.2 | + | 13513 | 0.67 | 0.304076 |
Target: 5'- uCAGCugguCgCCGuccgacGUGCUCGCGGCGUUGCc -3' miRNA: 3'- -GUCGu---G-GGC------CACGAGCGCCGUGACGu -5' |
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17210 | 3' | -61.4 | NC_004333.2 | + | 3654 | 0.66 | 0.322248 |
Target: 5'- cCAGUACCCGGUGUgcagcucguUCGCGacggucugagccgucGCgucguaGCUGCGg -3' miRNA: 3'- -GUCGUGGGCCACG---------AGCGC---------------CG------UGACGU- -5' |
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17210 | 3' | -61.4 | NC_004333.2 | + | 44412 | 0.66 | 0.342836 |
Target: 5'- aCGGcCugCCGG-GCUCGCuGGCuGgUGCGu -3' miRNA: 3'- -GUC-GugGGCCaCGAGCG-CCG-UgACGU- -5' |
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17210 | 3' | -61.4 | NC_004333.2 | + | 5044 | 0.66 | 0.351003 |
Target: 5'- aGGCGgCCGGcUGUUggccgacgucggCGCGGCGCUGa- -3' miRNA: 3'- gUCGUgGGCC-ACGA------------GCGCCGUGACgu -5' |
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17210 | 3' | -61.4 | NC_004333.2 | + | 22804 | 0.67 | 0.304076 |
Target: 5'- -cGUACCaGGUGUUCGUcGCGCUGUc -3' miRNA: 3'- guCGUGGgCCACGAGCGcCGUGACGu -5' |
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17210 | 3' | -61.4 | NC_004333.2 | + | 9650 | 0.67 | 0.31155 |
Target: 5'- -uGCGCCCGGcUGUUCGUuuucgggaaacGGCAUaGCGu -3' miRNA: 3'- guCGUGGGCC-ACGAGCG-----------CCGUGaCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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