miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17210 5' -56 NC_004333.2 + 13659 0.67 0.57627
Target:  5'- gGCAgCUGCGCGAgCAGcACGa-GCGUAg -3'
miRNA:   3'- gCGU-GACGCGCUgGUU-UGCggUGCAU- -5'
17210 5' -56 NC_004333.2 + 41431 0.67 0.57627
Target:  5'- gCGguCggGCGCGugCucGAGCGCCACa-- -3'
miRNA:   3'- -GCguGa-CGCGCugG--UUUGCGGUGcau -5'
17210 5' -56 NC_004333.2 + 6668 0.67 0.57627
Target:  5'- gGCGCUGgGCGGCgCGccGugGCgGCGa- -3'
miRNA:   3'- gCGUGACgCGCUG-GU--UugCGgUGCau -5'
17210 5' -56 NC_004333.2 + 27816 0.67 0.57627
Target:  5'- aCGgGCUcgGCGgcCGACCAGauucGCGCCGCGa- -3'
miRNA:   3'- -GCgUGA--CGC--GCUGGUU----UGCGGUGCau -5'
17210 5' -56 NC_004333.2 + 34053 0.67 0.57517
Target:  5'- gGCAC-GUGCGACCAGAcaagcgggucacuCGCgACGg- -3'
miRNA:   3'- gCGUGaCGCGCUGGUUU-------------GCGgUGCau -5'
17210 5' -56 NC_004333.2 + 48158 0.67 0.565288
Target:  5'- aCGUAUgugagGCGCGA--GAACGCgCACGUGa -3'
miRNA:   3'- -GCGUGa----CGCGCUggUUUGCG-GUGCAU- -5'
17210 5' -56 NC_004333.2 + 9749 0.67 0.565288
Target:  5'- aGCGCcggaUGCGCGcCCGucgucaacgAGCGCCACa-- -3'
miRNA:   3'- gCGUG----ACGCGCuGGU---------UUGCGGUGcau -5'
17210 5' -56 NC_004333.2 + 38397 0.67 0.565288
Target:  5'- gGCACgcccucgagGCGCauuucGCCGGuCGCCGCGUGc -3'
miRNA:   3'- gCGUGa--------CGCGc----UGGUUuGCGGUGCAU- -5'
17210 5' -56 NC_004333.2 + 21286 0.67 0.565288
Target:  5'- uGCGC-GCGaCGGCCGcccauuGAUGCgCACGUAa -3'
miRNA:   3'- gCGUGaCGC-GCUGGU------UUGCG-GUGCAU- -5'
17210 5' -56 NC_004333.2 + 31503 0.67 0.565288
Target:  5'- uCGUACUgucGCGCGucuaguUCGAGCGUCACGa- -3'
miRNA:   3'- -GCGUGA---CGCGCu-----GGUUUGCGGUGCau -5'
17210 5' -56 NC_004333.2 + 20739 0.67 0.562004
Target:  5'- gCGCGCUGCcggacaucgccgacGCGGCUgcGCGCCugaACGUc -3'
miRNA:   3'- -GCGUGACG--------------CGCUGGuuUGCGG---UGCAu -5'
17210 5' -56 NC_004333.2 + 5617 0.67 0.554361
Target:  5'- uGCACU-CGCG-CCAAGCcgucgccgGCCACGg- -3'
miRNA:   3'- gCGUGAcGCGCuGGUUUG--------CGGUGCau -5'
17210 5' -56 NC_004333.2 + 12055 0.67 0.554361
Target:  5'- uGCACcGCGauaCGGCCGcgaucgucGACGCUGCGUGc -3'
miRNA:   3'- gCGUGaCGC---GCUGGU--------UUGCGGUGCAU- -5'
17210 5' -56 NC_004333.2 + 37483 0.67 0.554361
Target:  5'- uGCACgccGCGCaaACCGcgAGCGCCgACGUAg -3'
miRNA:   3'- gCGUGa--CGCGc-UGGU--UUGCGG-UGCAU- -5'
17210 5' -56 NC_004333.2 + 26023 0.67 0.554361
Target:  5'- aGCGCcGCGUacuGGCCGccggcaucGACGCCGCGc- -3'
miRNA:   3'- gCGUGaCGCG---CUGGU--------UUGCGGUGCau -5'
17210 5' -56 NC_004333.2 + 13864 0.67 0.554361
Target:  5'- gCGCAUUgaGCGCG-CC--GCGCCGCGc- -3'
miRNA:   3'- -GCGUGA--CGCGCuGGuuUGCGGUGCau -5'
17210 5' -56 NC_004333.2 + 32600 0.67 0.543497
Target:  5'- gCGCGCcGCGCGACgucggCAAACGCUucCGg- -3'
miRNA:   3'- -GCGUGaCGCGCUG-----GUUUGCGGu-GCau -5'
17210 5' -56 NC_004333.2 + 46900 0.67 0.543497
Target:  5'- gCGCcuguguucauGCUGCaGCGcCgCGAGCGCCGCGa- -3'
miRNA:   3'- -GCG----------UGACG-CGCuG-GUUUGCGGUGCau -5'
17210 5' -56 NC_004333.2 + 8958 0.67 0.543497
Target:  5'- uCGCcaagaucaaGgUGCGCGGCUAAccGCGCCGCa-- -3'
miRNA:   3'- -GCG---------UgACGCGCUGGUU--UGCGGUGcau -5'
17210 5' -56 NC_004333.2 + 39069 0.67 0.543497
Target:  5'- aGUAC-GCGCGACUcguGCGCCguGCGUc -3'
miRNA:   3'- gCGUGaCGCGCUGGuu-UGCGG--UGCAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.