miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17212 5' -60.9 NC_004333.2 + 44809 1.04 0.000481
Target:  5'- aUACGCCGCGACGCUCGGCGAGGACAUg -3'
miRNA:   3'- -AUGCGGCGCUGCGAGCCGCUCCUGUA- -5'
17212 5' -60.9 NC_004333.2 + 31136 0.74 0.107629
Target:  5'- gGCGCuCGCGuCGUUCGGCGugaauauccagcAGGACGUg -3'
miRNA:   3'- aUGCG-GCGCuGCGAGCCGC------------UCCUGUA- -5'
17212 5' -60.9 NC_004333.2 + 28885 0.72 0.153689
Target:  5'- -gUGCCGCGcgaucGCGCUCGGCGcAGGcCGg -3'
miRNA:   3'- auGCGGCGC-----UGCGAGCCGC-UCCuGUa -5'
17212 5' -60.9 NC_004333.2 + 36337 0.71 0.159601
Target:  5'- gACGUCGCgugucgcugcaugucGugGCUCGGCGAGGuCu- -3'
miRNA:   3'- aUGCGGCG---------------CugCGAGCCGCUCCuGua -5'
17212 5' -60.9 NC_004333.2 + 24153 0.71 0.162197
Target:  5'- aUGCGCU-CGAUGUUCGGCGAucgGGGCAa -3'
miRNA:   3'- -AUGCGGcGCUGCGAGCCGCU---CCUGUa -5'
17212 5' -60.9 NC_004333.2 + 346 0.71 0.180494
Target:  5'- -uCGCCGUGACcguGCUCGGCGGcGuGACGa -3'
miRNA:   3'- auGCGGCGCUG---CGAGCCGCU-C-CUGUa -5'
17212 5' -60.9 NC_004333.2 + 30067 0.7 0.185345
Target:  5'- gGCGCCGCauggugcucGCGCUCGGCGccGGuGGCAg -3'
miRNA:   3'- aUGCGGCGc--------UGCGAGCCGC--UC-CUGUa -5'
17212 5' -60.9 NC_004333.2 + 23726 0.7 0.190311
Target:  5'- gAgGCCgGCGGCGUUCcgccucaaGGCGAGGACu- -3'
miRNA:   3'- aUgCGG-CGCUGCGAG--------CCGCUCCUGua -5'
17212 5' -60.9 NC_004333.2 + 17200 0.7 0.195394
Target:  5'- aUGCGCUGC--UGCUCGGCGGuGACGUg -3'
miRNA:   3'- -AUGCGGCGcuGCGAGCCGCUcCUGUA- -5'
17212 5' -60.9 NC_004333.2 + 6808 0.69 0.216926
Target:  5'- gGCGCCGUGGCGCUCGaauUGAGcACGUu -3'
miRNA:   3'- aUGCGGCGCUGCGAGCc--GCUCcUGUA- -5'
17212 5' -60.9 NC_004333.2 + 9996 0.69 0.23438
Target:  5'- cUGCGCgGCGACcuGCUCGuGUG-GGACGg -3'
miRNA:   3'- -AUGCGgCGCUG--CGAGC-CGCuCCUGUa -5'
17212 5' -60.9 NC_004333.2 + 36388 0.68 0.253
Target:  5'- gGCGauGCGACGCcCGGCGAcuacucGGGCGg -3'
miRNA:   3'- aUGCggCGCUGCGaGCCGCU------CCUGUa -5'
17212 5' -60.9 NC_004333.2 + 40095 0.68 0.266077
Target:  5'- cGCGCCGUGGCGC-CGcGCGAGuucCGUg -3'
miRNA:   3'- aUGCGGCGCUGCGaGC-CGCUCcu-GUA- -5'
17212 5' -60.9 NC_004333.2 + 7484 0.68 0.272819
Target:  5'- gGCGCCGCG-CGUcgaaGGCaAGGACAc -3'
miRNA:   3'- aUGCGGCGCuGCGag--CCGcUCCUGUa -5'
17212 5' -60.9 NC_004333.2 + 6668 0.68 0.279697
Target:  5'- gGCGCUggGCGGCGCgccguggCGGCGAugcGGGCu- -3'
miRNA:   3'- aUGCGG--CGCUGCGa------GCCGCU---CCUGua -5'
17212 5' -60.9 NC_004333.2 + 8046 0.67 0.293865
Target:  5'- -uCGCCGaCGA-GCUCGGCGgccuucaucGGGGCGa -3'
miRNA:   3'- auGCGGC-GCUgCGAGCCGC---------UCCUGUa -5'
17212 5' -60.9 NC_004333.2 + 20971 0.67 0.301156
Target:  5'- aACGCgCGCGGCGCg-GGCGAGuGGg-- -3'
miRNA:   3'- aUGCG-GCGCUGCGagCCGCUC-CUgua -5'
17212 5' -60.9 NC_004333.2 + 19505 0.67 0.308586
Target:  5'- cGCGCUgGCGGCGCUCguGGcCGuauGGGCAa -3'
miRNA:   3'- aUGCGG-CGCUGCGAG--CC-GCu--CCUGUa -5'
17212 5' -60.9 NC_004333.2 + 43050 0.67 0.315392
Target:  5'- aGCGCCGCc-CGCUcguccgcCGGCGAGGGu-- -3'
miRNA:   3'- aUGCGGCGcuGCGA-------GCCGCUCCUgua -5'
17212 5' -60.9 NC_004333.2 + 30614 0.67 0.316155
Target:  5'- gACGaUCGCGaagGCGCUCGaGUGGGGAUg- -3'
miRNA:   3'- aUGC-GGCGC---UGCGAGC-CGCUCCUGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.