miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17212 5' -60.9 NC_004333.2 + 44809 1.04 0.000481
Target:  5'- aUACGCCGCGACGCUCGGCGAGGACAUg -3'
miRNA:   3'- -AUGCGGCGCUGCGAGCCGCUCCUGUA- -5'
17212 5' -60.9 NC_004333.2 + 19505 0.67 0.308586
Target:  5'- cGCGCUgGCGGCGCUCguGGcCGuauGGGCAa -3'
miRNA:   3'- aUGCGG-CGCUGCGAG--CC-GCu--CCUGUa -5'
17212 5' -60.9 NC_004333.2 + 46356 0.67 0.331711
Target:  5'- aUGCGCCGCuGCGgaUUUGGCGcggccuAGGACAg -3'
miRNA:   3'- -AUGCGGCGcUGC--GAGCCGC------UCCUGUa -5'
17212 5' -60.9 NC_004333.2 + 10869 0.66 0.339698
Target:  5'- gACGCCGCGcgggaagaACGC-CGGCGc-GACAg -3'
miRNA:   3'- aUGCGGCGC--------UGCGaGCCGCucCUGUa -5'
17212 5' -60.9 NC_004333.2 + 20971 0.67 0.301156
Target:  5'- aACGCgCGCGGCGCg-GGCGAGuGGg-- -3'
miRNA:   3'- aUGCG-GCGCUGCGagCCGCUC-CUgua -5'
17212 5' -60.9 NC_004333.2 + 37443 0.66 0.356086
Target:  5'- cUGCGgCGUGACGaaCGGCGccGACAUu -3'
miRNA:   3'- -AUGCgGCGCUGCgaGCCGCucCUGUA- -5'
17212 5' -60.9 NC_004333.2 + 48019 0.66 0.364486
Target:  5'- uUGC-CCGCG-CGCUCuGGCGuguuGGGCGc -3'
miRNA:   3'- -AUGcGGCGCuGCGAG-CCGCu---CCUGUa -5'
17212 5' -60.9 NC_004333.2 + 7699 0.66 0.373022
Target:  5'- gGCGUCGUaGCGgugaUCGGCGcGGACAg -3'
miRNA:   3'- aUGCGGCGcUGCg---AGCCGCuCCUGUa -5'
17212 5' -60.9 NC_004333.2 + 8046 0.67 0.293865
Target:  5'- -uCGCCGaCGA-GCUCGGCGgccuucaucGGGGCGa -3'
miRNA:   3'- auGCGGC-GCUgCGAGCCGC---------UCCUGUa -5'
17212 5' -60.9 NC_004333.2 + 28885 0.72 0.153689
Target:  5'- -gUGCCGCGcgaucGCGCUCGGCGcAGGcCGg -3'
miRNA:   3'- auGCGGCGC-----UGCGAGCCGC-UCCuGUa -5'
17212 5' -60.9 NC_004333.2 + 24153 0.71 0.162197
Target:  5'- aUGCGCU-CGAUGUUCGGCGAucgGGGCAa -3'
miRNA:   3'- -AUGCGGcGCUGCGAGCCGCU---CCUGUa -5'
17212 5' -60.9 NC_004333.2 + 6808 0.69 0.216926
Target:  5'- gGCGCCGUGGCGCUCGaauUGAGcACGUu -3'
miRNA:   3'- aUGCGGCGCUGCGAGCc--GCUCcUGUA- -5'
17212 5' -60.9 NC_004333.2 + 9996 0.69 0.23438
Target:  5'- cUGCGCgGCGACcuGCUCGuGUG-GGACGg -3'
miRNA:   3'- -AUGCGgCGCUG--CGAGC-CGCuCCUGUa -5'
17212 5' -60.9 NC_004333.2 + 36388 0.68 0.253
Target:  5'- gGCGauGCGACGCcCGGCGAcuacucGGGCGg -3'
miRNA:   3'- aUGCggCGCUGCGaGCCGCU------CCUGUa -5'
17212 5' -60.9 NC_004333.2 + 40095 0.68 0.266077
Target:  5'- cGCGCCGUGGCGC-CGcGCGAGuucCGUg -3'
miRNA:   3'- aUGCGGCGCUGCGaGC-CGCUCcu-GUA- -5'
17212 5' -60.9 NC_004333.2 + 7484 0.68 0.272819
Target:  5'- gGCGCCGCG-CGUcgaaGGCaAGGACAc -3'
miRNA:   3'- aUGCGGCGCuGCGag--CCGcUCCUGUa -5'
17212 5' -60.9 NC_004333.2 + 6668 0.68 0.279697
Target:  5'- gGCGCUggGCGGCGCgccguggCGGCGAugcGGGCu- -3'
miRNA:   3'- aUGCGG--CGCUGCGa------GCCGCU---CCUGua -5'
17212 5' -60.9 NC_004333.2 + 31380 0.67 0.323864
Target:  5'- gGCGCCGU---GCUCGGCGucGGCGc -3'
miRNA:   3'- aUGCGGCGcugCGAGCCGCucCUGUa -5'
17212 5' -60.9 NC_004333.2 + 47786 0.67 0.323864
Target:  5'- gGCG-CGCGACGUgcCGGCGAGcGugAa -3'
miRNA:   3'- aUGCgGCGCUGCGa-GCCGCUC-CugUa -5'
17212 5' -60.9 NC_004333.2 + 11770 0.66 0.347823
Target:  5'- cACGCCGCccGGCGCUgCGuCGAcGGAUAUg -3'
miRNA:   3'- aUGCGGCG--CUGCGA-GCcGCU-CCUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.