miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17213 3' -52.7 NC_004333.2 + 4953 0.71 0.532225
Target:  5'- aGCGcGCGCUAcAUGGUCaGCgGCGGCa -3'
miRNA:   3'- aCGU-CGUGGUaUGCUAGaUGgUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 1509 0.71 0.532225
Target:  5'- cUGCAGCaagACCucACGAUC-ACCAaucCGGCg -3'
miRNA:   3'- -ACGUCG---UGGuaUGCUAGaUGGU---GCCG- -5'
17213 3' -52.7 NC_004333.2 + 6412 0.7 0.543235
Target:  5'- cGCAucguaaaaucGCGCgGUGCGGUCguccUCACGGCu -3'
miRNA:   3'- aCGU----------CGUGgUAUGCUAGau--GGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 4856 0.7 0.543235
Target:  5'- cGCGcGCGCCGUGcCGAUgccgCUGCCGCcGCu -3'
miRNA:   3'- aCGU-CGUGGUAU-GCUA----GAUGGUGcCG- -5'
17213 3' -52.7 NC_004333.2 + 36384 0.7 0.554319
Target:  5'- aUGCGaCGCCcgGCGA-CUACUcggGCGGCg -3'
miRNA:   3'- -ACGUcGUGGuaUGCUaGAUGG---UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 21163 0.7 0.565469
Target:  5'- aUGguGCGCUu--CGcgCUGCCGCaGGCc -3'
miRNA:   3'- -ACguCGUGGuauGCuaGAUGGUG-CCG- -5'
17213 3' -52.7 NC_004333.2 + 47467 0.7 0.565469
Target:  5'- aGCAacGCGCCGgcgGCGA-CUGCCGCgcugaacgaGGCg -3'
miRNA:   3'- aCGU--CGUGGUa--UGCUaGAUGGUG---------CCG- -5'
17213 3' -52.7 NC_004333.2 + 2996 0.7 0.565469
Target:  5'- aGCGGCACguUgACGGUCacgACCGCuGCg -3'
miRNA:   3'- aCGUCGUGguA-UGCUAGa--UGGUGcCG- -5'
17213 3' -52.7 NC_004333.2 + 29891 0.7 0.576677
Target:  5'- gGCGGCGCg--GCGAUCaGCaucaACGGCc -3'
miRNA:   3'- aCGUCGUGguaUGCUAGaUGg---UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 2337 0.7 0.587933
Target:  5'- aUGCgAGCACCGUGCGGcCgUugCGCaGCu -3'
miRNA:   3'- -ACG-UCGUGGUAUGCUaG-AugGUGcCG- -5'
17213 3' -52.7 NC_004333.2 + 37559 0.7 0.599228
Target:  5'- gGCGGC-CCAUugcuCGAUCUGCaugcguuUGGCg -3'
miRNA:   3'- aCGUCGuGGUAu---GCUAGAUGgu-----GCCG- -5'
17213 3' -52.7 NC_004333.2 + 15985 0.7 0.599228
Target:  5'- gGCgauGGCACCGUggGCGGucgcaucgUCUACgAUGGCg -3'
miRNA:   3'- aCG---UCGUGGUA--UGCU--------AGAUGgUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 2284 0.69 0.621898
Target:  5'- cGCGGCgaacaACUAcACGAUCgcgUACgACGGCa -3'
miRNA:   3'- aCGUCG-----UGGUaUGCUAG---AUGgUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 26049 0.69 0.633253
Target:  5'- cGguGCGCCG---GAUUUGCCAgUGGCg -3'
miRNA:   3'- aCguCGUGGUaugCUAGAUGGU-GCCG- -5'
17213 3' -52.7 NC_004333.2 + 8429 0.69 0.633253
Target:  5'- cGguGcCGCCGacguUGAUCUGCC-CGGCc -3'
miRNA:   3'- aCguC-GUGGUau--GCUAGAUGGuGCCG- -5'
17213 3' -52.7 NC_004333.2 + 35819 0.69 0.633253
Target:  5'- cGCGGUAUC-UGC--UCUGCUAUGGCa -3'
miRNA:   3'- aCGUCGUGGuAUGcuAGAUGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 43864 0.69 0.633253
Target:  5'- cGCAGCACC---CGGU--GCuCGCGGCa -3'
miRNA:   3'- aCGUCGUGGuauGCUAgaUG-GUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 28739 0.69 0.640066
Target:  5'- aGCAcGCACCGgaauucugcgaccGCGAUCcggcgACUugGGCg -3'
miRNA:   3'- aCGU-CGUGGUa------------UGCUAGa----UGGugCCG- -5'
17213 3' -52.7 NC_004333.2 + 3610 0.69 0.641201
Target:  5'- cGCGGCACCGcguugaucccgcuuUAcgcCGAUCaGCCGCaGCa -3'
miRNA:   3'- aCGUCGUGGU--------------AU---GCUAGaUGGUGcCG- -5'
17213 3' -52.7 NC_004333.2 + 20467 0.69 0.644607
Target:  5'- aGCGGCgcgGCCAcUGCG----GCCACGGCc -3'
miRNA:   3'- aCGUCG---UGGU-AUGCuagaUGGUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.