miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17213 3' -52.7 NC_004333.2 + 44983 1.13 0.000778
Target:  5'- cUGCAGCACCAUACGAUCUACCACGGCg -3'
miRNA:   3'- -ACGUCGUGGUAUGCUAGAUGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 13993 0.81 0.133648
Target:  5'- gGCGGCAgCGgccACGAUC-GCCACGGCa -3'
miRNA:   3'- aCGUCGUgGUa--UGCUAGaUGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 6565 0.78 0.192362
Target:  5'- aGCGGCGCgCGUACGcgcgaaagcccgcAUCgccGCCACGGCg -3'
miRNA:   3'- aCGUCGUG-GUAUGC-------------UAGa--UGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 29947 0.77 0.221251
Target:  5'- cGCAGCGCUucgccgACGA-CUACCGCGcGCg -3'
miRNA:   3'- aCGUCGUGGua----UGCUaGAUGGUGC-CG- -5'
17213 3' -52.7 NC_004333.2 + 5618 0.76 0.266835
Target:  5'- cUGCAcucGCGCCAaGCcGUCgccgGCCACGGCa -3'
miRNA:   3'- -ACGU---CGUGGUaUGcUAGa---UGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 25131 0.75 0.29614
Target:  5'- gGCAGCGaCAgcGCGAUCaACUACGGCg -3'
miRNA:   3'- aCGUCGUgGUa-UGCUAGaUGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 34261 0.75 0.311707
Target:  5'- cGCAGUACCAguCGcAUCgUACCAgGGCa -3'
miRNA:   3'- aCGUCGUGGUauGC-UAG-AUGGUgCCG- -5'
17213 3' -52.7 NC_004333.2 + 3110 0.75 0.311707
Target:  5'- gGCGGCcagcuGCCGUACGAUCUGaaguUCGCGcGCu -3'
miRNA:   3'- aCGUCG-----UGGUAUGCUAGAU----GGUGC-CG- -5'
17213 3' -52.7 NC_004333.2 + 37673 0.74 0.353306
Target:  5'- aUGCAGCACCGgcgACGAuucgaacaUCaACCgugACGGCu -3'
miRNA:   3'- -ACGUCGUGGUa--UGCU--------AGaUGG---UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 13913 0.74 0.353306
Target:  5'- gGCGGCuGCCGUgGCGAUCgugGCCGCuGCc -3'
miRNA:   3'- aCGUCG-UGGUA-UGCUAGa--UGGUGcCG- -5'
17213 3' -52.7 NC_004333.2 + 15253 0.74 0.37101
Target:  5'- aGCAGCGCgAaaugagcgACGAUUUGCCgugcuGCGGCg -3'
miRNA:   3'- aCGUCGUGgUa-------UGCUAGAUGG-----UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 3911 0.74 0.37101
Target:  5'- gGUAGCGCCAgGCGG-CaGCgGCGGCa -3'
miRNA:   3'- aCGUCGUGGUaUGCUaGaUGgUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 43306 0.73 0.427636
Target:  5'- aUGCGGCGCgggCAUGCGA---ACgCACGGCa -3'
miRNA:   3'- -ACGUCGUG---GUAUGCUagaUG-GUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 29887 0.72 0.468106
Target:  5'- gGCgaAGCGCUGcGCGAUCggGCCGCGcGCg -3'
miRNA:   3'- aCG--UCGUGGUaUGCUAGa-UGGUGC-CG- -5'
17213 3' -52.7 NC_004333.2 + 9608 0.72 0.47853
Target:  5'- cGCGGCAUCGgcCGGUugcgcaccggCUGCCGgCGGCg -3'
miRNA:   3'- aCGUCGUGGUauGCUA----------GAUGGU-GCCG- -5'
17213 3' -52.7 NC_004333.2 + 47875 0.71 0.485894
Target:  5'- gGCGGCgcgcugcacgaucaGCC-UGCGAUCUGCagguauucgagCGCGGCg -3'
miRNA:   3'- aCGUCG--------------UGGuAUGCUAGAUG-----------GUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 30292 0.71 0.496506
Target:  5'- cGCGGCGC---GCGAUCgaucaggcagcggcUAUCACGGCa -3'
miRNA:   3'- aCGUCGUGguaUGCUAG--------------AUGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 6826 0.71 0.508299
Target:  5'- gGCGGCACuCcgGCGGggcacucgucggCUACCGgCGGCu -3'
miRNA:   3'- aCGUCGUG-GuaUGCUa-----------GAUGGU-GCCG- -5'
17213 3' -52.7 NC_004333.2 + 23092 0.71 0.510456
Target:  5'- cUGCAGCugCAU-CGGUUgcgucgGCUgaACGGCg -3'
miRNA:   3'- -ACGUCGugGUAuGCUAGa-----UGG--UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 22180 0.71 0.521296
Target:  5'- gGCGGCgGCCGgcgGCGGUUcggcgGCUGCGGCc -3'
miRNA:   3'- aCGUCG-UGGUa--UGCUAGa----UGGUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.