miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17213 3' -52.7 NC_004333.2 + 44983 1.13 0.000778
Target:  5'- cUGCAGCACCAUACGAUCUACCACGGCg -3'
miRNA:   3'- -ACGUCGUGGUAUGCUAGAUGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 9167 0.69 0.655948
Target:  5'- cGCAGCugCGcgcuUGCGuUCguucGCgACGGCa -3'
miRNA:   3'- aCGUCGugGU----AUGCuAGa---UGgUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 31251 0.68 0.68642
Target:  5'- cGCAGCGCCGUcuCGGUgUucgucagugcaagcACCAugcCGGCg -3'
miRNA:   3'- aCGUCGUGGUAu-GCUAgA--------------UGGU---GCCG- -5'
17213 3' -52.7 NC_004333.2 + 29045 0.66 0.825954
Target:  5'- aGCAccGCGCCGcccACGAUCgcGCCGaguUGGCg -3'
miRNA:   3'- aCGU--CGUGGUa--UGCUAGa-UGGU---GCCG- -5'
17213 3' -52.7 NC_004333.2 + 3911 0.74 0.37101
Target:  5'- gGUAGCGCCAgGCGG-CaGCgGCGGCa -3'
miRNA:   3'- aCGUCGUGGUaUGCUaGaUGgUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 29887 0.72 0.468106
Target:  5'- gGCgaAGCGCUGcGCGAUCggGCCGCGcGCg -3'
miRNA:   3'- aCG--UCGUGGUaUGCUAGa-UGGUGC-CG- -5'
17213 3' -52.7 NC_004333.2 + 6826 0.71 0.508299
Target:  5'- gGCGGCACuCcgGCGGggcacucgucggCUACCGgCGGCu -3'
miRNA:   3'- aCGUCGUG-GuaUGCUa-----------GAUGGU-GCCG- -5'
17213 3' -52.7 NC_004333.2 + 23092 0.71 0.510456
Target:  5'- cUGCAGCugCAU-CGGUUgcgucgGCUgaACGGCg -3'
miRNA:   3'- -ACGUCGugGUAuGCUAGa-----UGG--UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 21163 0.7 0.565469
Target:  5'- aUGguGCGCUu--CGcgCUGCCGCaGGCc -3'
miRNA:   3'- -ACguCGUGGuauGCuaGAUGGUG-CCG- -5'
17213 3' -52.7 NC_004333.2 + 8429 0.69 0.633253
Target:  5'- cGguGcCGCCGacguUGAUCUGCC-CGGCc -3'
miRNA:   3'- aCguC-GUGGUau--GCUAGAUGGuGCCG- -5'
17213 3' -52.7 NC_004333.2 + 2337 0.7 0.587933
Target:  5'- aUGCgAGCACCGUGCGGcCgUugCGCaGCu -3'
miRNA:   3'- -ACG-UCGUGGUAUGCUaG-AugGUGcCG- -5'
17213 3' -52.7 NC_004333.2 + 4856 0.7 0.543235
Target:  5'- cGCGcGCGCCGUGcCGAUgccgCUGCCGCcGCu -3'
miRNA:   3'- aCGU-CGUGGUAU-GCUA----GAUGGUGcCG- -5'
17213 3' -52.7 NC_004333.2 + 6565 0.78 0.192362
Target:  5'- aGCGGCGCgCGUACGcgcgaaagcccgcAUCgccGCCACGGCg -3'
miRNA:   3'- aCGUCGUG-GUAUGC-------------UAGa--UGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 26049 0.69 0.633253
Target:  5'- cGguGCGCCG---GAUUUGCCAgUGGCg -3'
miRNA:   3'- aCguCGUGGUaugCUAGAUGGU-GCCG- -5'
17213 3' -52.7 NC_004333.2 + 13913 0.74 0.353306
Target:  5'- gGCGGCuGCCGUgGCGAUCgugGCCGCuGCc -3'
miRNA:   3'- aCGUCG-UGGUA-UGCUAGa--UGGUGcCG- -5'
17213 3' -52.7 NC_004333.2 + 22180 0.71 0.521296
Target:  5'- gGCGGCgGCCGgcgGCGGUUcggcgGCUGCGGCc -3'
miRNA:   3'- aCGUCG-UGGUa--UGCUAGa----UGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 43864 0.69 0.633253
Target:  5'- cGCAGCACC---CGGU--GCuCGCGGCa -3'
miRNA:   3'- aCGUCGUGGuauGCUAgaUG-GUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 38388 0.68 0.667267
Target:  5'- gGguGCGCCGgcgugACGccg-GCCACGGUc -3'
miRNA:   3'- aCguCGUGGUa----UGCuagaUGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 15253 0.74 0.37101
Target:  5'- aGCAGCGCgAaaugagcgACGAUUUGCCgugcuGCGGCg -3'
miRNA:   3'- aCGUCGUGgUa-------UGCUAGAUGG-----UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 9608 0.72 0.47853
Target:  5'- cGCGGCAUCGgcCGGUugcgcaccggCUGCCGgCGGCg -3'
miRNA:   3'- aCGUCGUGGUauGCUA----------GAUGGU-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.