miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17213 3' -52.7 NC_004333.2 + 441 0.66 0.825954
Target:  5'- gGCAGUGCgGaACGcaAUCU-UCACGGCg -3'
miRNA:   3'- aCGUCGUGgUaUGC--UAGAuGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 691 0.66 0.776505
Target:  5'- gGCAGCACCGgcccgcuguCGGgcaCUGCCuacguuacugAUGGCg -3'
miRNA:   3'- aCGUCGUGGUau-------GCUa--GAUGG----------UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 1452 0.66 0.796846
Target:  5'- cGCGGCuuCAUGCGuUCguucaagGCCGCcgccGGCa -3'
miRNA:   3'- aCGUCGugGUAUGCuAGa------UGGUG----CCG- -5'
17213 3' -52.7 NC_004333.2 + 1509 0.71 0.532225
Target:  5'- cUGCAGCaagACCucACGAUC-ACCAaucCGGCg -3'
miRNA:   3'- -ACGUCG---UGGuaUGCUAGaUGGU---GCCG- -5'
17213 3' -52.7 NC_004333.2 + 2284 0.69 0.621898
Target:  5'- cGCGGCgaacaACUAcACGAUCgcgUACgACGGCa -3'
miRNA:   3'- aCGUCG-----UGGUaUGCUAG---AUGgUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 2337 0.7 0.587933
Target:  5'- aUGCgAGCACCGUGCGGcCgUugCGCaGCu -3'
miRNA:   3'- -ACG-UCGUGGUAUGCUaG-AugGUGcCG- -5'
17213 3' -52.7 NC_004333.2 + 2393 0.68 0.710961
Target:  5'- aUGaCGGCGCCG-GCGGUC-GCCuggucgccguacaGCGGCa -3'
miRNA:   3'- -AC-GUCGUGGUaUGCUAGaUGG-------------UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 2502 0.68 0.667267
Target:  5'- cGCcGCGCCGUACcaaggcacgCUGCCgcuguACGGCg -3'
miRNA:   3'- aCGuCGUGGUAUGcua------GAUGG-----UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 2996 0.7 0.565469
Target:  5'- aGCGGCACguUgACGGUCacgACCGCuGCg -3'
miRNA:   3'- aCGUCGUGguA-UGCUAGa--UGGUGcCG- -5'
17213 3' -52.7 NC_004333.2 + 3110 0.75 0.311707
Target:  5'- gGCGGCcagcuGCCGUACGAUCUGaaguUCGCGcGCu -3'
miRNA:   3'- aCGUCG-----UGGUAUGCUAGAU----GGUGC-CG- -5'
17213 3' -52.7 NC_004333.2 + 3610 0.69 0.641201
Target:  5'- cGCGGCACCGcguugaucccgcuuUAcgcCGAUCaGCCGCaGCa -3'
miRNA:   3'- aCGUCGUGGU--------------AU---GCUAGaUGGUGcCG- -5'
17213 3' -52.7 NC_004333.2 + 3678 0.68 0.700963
Target:  5'- cGCAgGCGCCcgacugggcgaAUACGAUC-GCCGCgauguGGCg -3'
miRNA:   3'- aCGU-CGUGG-----------UAUGCUAGaUGGUG-----CCG- -5'
17213 3' -52.7 NC_004333.2 + 3911 0.74 0.37101
Target:  5'- gGUAGCGCCAgGCGG-CaGCgGCGGCa -3'
miRNA:   3'- aCGUCGUGGUaUGCUaGaUGgUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 4638 0.68 0.700963
Target:  5'- --gAGCGCCAUcGCGAUCaugGCgACGGg -3'
miRNA:   3'- acgUCGUGGUA-UGCUAGa--UGgUGCCg -5'
17213 3' -52.7 NC_004333.2 + 4856 0.7 0.543235
Target:  5'- cGCGcGCGCCGUGcCGAUgccgCUGCCGCcGCu -3'
miRNA:   3'- aCGU-CGUGGUAU-GCUA----GAUGGUGcCG- -5'
17213 3' -52.7 NC_004333.2 + 4953 0.71 0.532225
Target:  5'- aGCGcGCGCUAcAUGGUCaGCgGCGGCa -3'
miRNA:   3'- aCGU-CGUGGUaUGCUAGaUGgUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 4997 0.66 0.786761
Target:  5'- cGCAGUACgGcGCGAUgUuuuggaugGCgACGGCg -3'
miRNA:   3'- aCGUCGUGgUaUGCUAgA--------UGgUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 5496 0.68 0.667267
Target:  5'- cGCAGaUGCCG-ACGAcgCUGCCGCgauGGCa -3'
miRNA:   3'- aCGUC-GUGGUaUGCUa-GAUGGUG---CCG- -5'
17213 3' -52.7 NC_004333.2 + 5618 0.76 0.266835
Target:  5'- cUGCAcucGCGCCAaGCcGUCgccgGCCACGGCa -3'
miRNA:   3'- -ACGU---CGUGGUaUGcUAGa---UGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 5936 0.67 0.756591
Target:  5'- aGCGGCACCAcggGCGuggcgugcauaaaUACCGgcCGGCg -3'
miRNA:   3'- aCGUCGUGGUa--UGCuag----------AUGGU--GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.