Results 1 - 20 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17213 | 3' | -52.7 | NC_004333.2 | + | 6506 | 0.66 | 0.825954 |
Target: 5'- cGUGGaCAUgguaaUGUGCGAUUUGCCguACGGCa -3' miRNA: 3'- aCGUC-GUG-----GUAUGCUAGAUGG--UGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 4997 | 0.66 | 0.786761 |
Target: 5'- cGCAGUACgGcGCGAUgUuuuggaugGCgACGGCg -3' miRNA: 3'- aCGUCGUGgUaUGCUAgA--------UGgUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 31385 | 0.66 | 0.786761 |
Target: 5'- uUGCgGGCGCCGUGC--UCgGCguCGGCg -3' miRNA: 3'- -ACG-UCGUGGUAUGcuAGaUGguGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 46945 | 0.66 | 0.785743 |
Target: 5'- cGCGGCACU---CGGUUUcuuucgaGCgCACGGCg -3' miRNA: 3'- aCGUCGUGGuauGCUAGA-------UG-GUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 691 | 0.66 | 0.776505 |
Target: 5'- gGCAGCACCGgcccgcuguCGGgcaCUGCCuacguuacugAUGGCg -3' miRNA: 3'- aCGUCGUGGUau-------GCUa--GAUGG----------UGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 27598 | 0.66 | 0.776505 |
Target: 5'- cGCGGCACU-UGCGAUCga-CACGuCg -3' miRNA: 3'- aCGUCGUGGuAUGCUAGaugGUGCcG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 36282 | 0.66 | 0.772358 |
Target: 5'- cGCGacguccuGCGCCAUGCGAUacgcGCCGCccgaguagucgccgGGCg -3' miRNA: 3'- aCGU-------CGUGGUAUGCUAga--UGGUG--------------CCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 46110 | 0.66 | 0.786761 |
Target: 5'- gGCcgAGCGCgGUGCGc---GCUACGGCa -3' miRNA: 3'- aCG--UCGUGgUAUGCuagaUGGUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 7961 | 0.66 | 0.796846 |
Target: 5'- aGUAGuCGCCAUACGuggCaACCucgucguCGGCu -3' miRNA: 3'- aCGUC-GUGGUAUGCua-GaUGGu------GCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 1452 | 0.66 | 0.796846 |
Target: 5'- cGCGGCuuCAUGCGuUCguucaagGCCGCcgccGGCa -3' miRNA: 3'- aCGUCGugGUAUGCuAGa------UGGUG----CCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 20315 | 0.66 | 0.800829 |
Target: 5'- gUGCGGCGCgAUGuaggccagucgcgguCGAUCgccGCCACGaaaGCg -3' miRNA: 3'- -ACGUCGUGgUAU---------------GCUAGa--UGGUGC---CG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 38230 | 0.66 | 0.816453 |
Target: 5'- aGCGGCguGCCAa--GAUCggcgGCCGgguCGGCg -3' miRNA: 3'- aCGUCG--UGGUaugCUAGa---UGGU---GCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 31429 | 0.66 | 0.825954 |
Target: 5'- cGCGGCugCGUcgcucggcaGCGGUCUgaugaaGCUggcCGGCa -3' miRNA: 3'- aCGUCGugGUA---------UGCUAGA------UGGu--GCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 47281 | 0.66 | 0.825954 |
Target: 5'- aGUAGCGcgcCCGUcgcgGCGAcuugugccUCUGCUgcGCGGCa -3' miRNA: 3'- aCGUCGU---GGUA----UGCU--------AGAUGG--UGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 11513 | 0.66 | 0.825954 |
Target: 5'- cGCAGgaaUACCAcacaGCGGUCgaaggcgacgUGCUGCGGCa -3' miRNA: 3'- aCGUC---GUGGUa---UGCUAG----------AUGGUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 24290 | 0.66 | 0.825954 |
Target: 5'- gGCaAGCGCCGUuuuACGG-CgGCCagGCGGCc -3' miRNA: 3'- aCG-UCGUGGUA---UGCUaGaUGG--UGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 41493 | 0.66 | 0.825954 |
Target: 5'- aGCAGCGCCuguuCGAUCaugugCGCGuGCu -3' miRNA: 3'- aCGUCGUGGuau-GCUAGaug--GUGC-CG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 28837 | 0.66 | 0.816453 |
Target: 5'- cGCcGCGacCCGcGCGGUCga-CGCGGCg -3' miRNA: 3'- aCGuCGU--GGUaUGCUAGaugGUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 13816 | 0.66 | 0.816453 |
Target: 5'- cGCGGCGuCC-UACGcgCUcgACUucaACGGCa -3' miRNA: 3'- aCGUCGU-GGuAUGCuaGA--UGG---UGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 34194 | 0.66 | 0.816453 |
Target: 5'- aGCAGUaACgGUuucACGAUCaaUGCgACGGCc -3' miRNA: 3'- aCGUCG-UGgUA---UGCUAG--AUGgUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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