miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17214 5' -59.4 NC_004333.2 + 11428 0.66 0.444882
Target:  5'- cGUCgaGCGCGGCaaGGUgacgacgaacCGCGCC-GCCUu -3'
miRNA:   3'- aCAGa-CGCGCCG--CUA----------GCGCGGaUGGA- -5'
17214 5' -59.4 NC_004333.2 + 7604 0.66 0.444882
Target:  5'- --cCUGCGUGaugaugcccuGCGAUUGCGUCUGCa- -3'
miRNA:   3'- acaGACGCGC----------CGCUAGCGCGGAUGga -5'
17214 5' -59.4 NC_004333.2 + 769 0.66 0.444882
Target:  5'- -cUCgcggGCgGCGGCacGAUCGCGCUcACCg -3'
miRNA:   3'- acAGa---CG-CGCCG--CUAGCGCGGaUGGa -5'
17214 5' -59.4 NC_004333.2 + 29899 0.66 0.443918
Target:  5'- aGUCgacuggcgGCGCGGCGAUCaGCaucaacgGCCcggugACCg -3'
miRNA:   3'- aCAGa-------CGCGCCGCUAG-CG-------CGGa----UGGa -5'
17214 5' -59.4 NC_004333.2 + 8944 0.66 0.435297
Target:  5'- ---gUGCGCGGCuaacCGCGCCgcaGCCg -3'
miRNA:   3'- acagACGCGCCGcua-GCGCGGa--UGGa -5'
17214 5' -59.4 NC_004333.2 + 28822 0.66 0.435297
Target:  5'- gGUC-GaCGCGGCGcUCGCGCaguugcugGCCg -3'
miRNA:   3'- aCAGaC-GCGCCGCuAGCGCGga------UGGa -5'
17214 5' -59.4 NC_004333.2 + 1861 0.66 0.435297
Target:  5'- gUGUC-GUGCGGUucuGA-CGCGCCUgGCCc -3'
miRNA:   3'- -ACAGaCGCGCCG---CUaGCGCGGA-UGGa -5'
17214 5' -59.4 NC_004333.2 + 41742 0.66 0.435297
Target:  5'- -aUCgGCGCgGGCGAcucgCGCGCCggGCUa -3'
miRNA:   3'- acAGaCGCG-CCGCUa---GCGCGGa-UGGa -5'
17214 5' -59.4 NC_004333.2 + 45963 0.66 0.425833
Target:  5'- aUGUgU-CGCGGCGAggCGUggugucccgGCCUGCCa -3'
miRNA:   3'- -ACAgAcGCGCCGCUa-GCG---------CGGAUGGa -5'
17214 5' -59.4 NC_004333.2 + 40112 0.66 0.425833
Target:  5'- aUGUCuUGCGaGGCGucCGCGCCguggcGCCg -3'
miRNA:   3'- -ACAG-ACGCgCCGCuaGCGCGGa----UGGa -5'
17214 5' -59.4 NC_004333.2 + 20676 0.66 0.425833
Target:  5'- cGaCUGCGCgaGGcCGAgcCGCGCCUGCa- -3'
miRNA:   3'- aCaGACGCG--CC-GCUa-GCGCGGAUGga -5'
17214 5' -59.4 NC_004333.2 + 41974 0.67 0.407278
Target:  5'- gUGUCgccaGUGCgGGCGAcCGCGCCaagGCUUc -3'
miRNA:   3'- -ACAGa---CGCG-CCGCUaGCGCGGa--UGGA- -5'
17214 5' -59.4 NC_004333.2 + 27424 0.67 0.398192
Target:  5'- --cCUGCGCGGCGA-CG-GCUgucgACCa -3'
miRNA:   3'- acaGACGCGCCGCUaGCgCGGa---UGGa -5'
17214 5' -59.4 NC_004333.2 + 3288 0.67 0.398192
Target:  5'- cGUCaucgggGCG-GGCGG-CGCGCCggGCCg -3'
miRNA:   3'- aCAGa-----CGCgCCGCUaGCGCGGa-UGGa -5'
17214 5' -59.4 NC_004333.2 + 30286 0.67 0.389237
Target:  5'- aGUUU-CGaCGGCGAgcuggccgccgUCGCGCCUGCg- -3'
miRNA:   3'- aCAGAcGC-GCCGCU-----------AGCGCGGAUGga -5'
17214 5' -59.4 NC_004333.2 + 8681 0.67 0.388349
Target:  5'- cGUCgGCGUucagcacGGCGAaCGUGCCgACCg -3'
miRNA:   3'- aCAGaCGCG-------CCGCUaGCGCGGaUGGa -5'
17214 5' -59.4 NC_004333.2 + 37079 0.67 0.380416
Target:  5'- gGUUUGCGCGGau-UCGCG-CUAUCg -3'
miRNA:   3'- aCAGACGCGCCgcuAGCGCgGAUGGa -5'
17214 5' -59.4 NC_004333.2 + 28968 0.67 0.380416
Target:  5'- gGUCgaaCGCGGCGAUCaguuGCGCg-GCCg -3'
miRNA:   3'- aCAGac-GCGCCGCUAG----CGCGgaUGGa -5'
17214 5' -59.4 NC_004333.2 + 15280 0.67 0.377795
Target:  5'- cGUgCUGCgGCGGCGcgGUCagcaucagcaccggGCGCUUGCCg -3'
miRNA:   3'- aCA-GACG-CGCCGC--UAG--------------CGCGGAUGGa -5'
17214 5' -59.4 NC_004333.2 + 6767 0.67 0.369149
Target:  5'- cGUCgccaaUGCGCcccgcacgugaagcGGCGGaugCGCGCCUGCUc -3'
miRNA:   3'- aCAG-----ACGCG--------------CCGCUa--GCGCGGAUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.