miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17215 3' -55.5 NC_004333.2 + 30732 0.68 0.491006
Target:  5'- -aCGGCUucaugaagguGCUcgaGCAGCGCACGCC-GCGc -3'
miRNA:   3'- uaGUCGA----------UGG---UGUUGCGUGCGGaCGU- -5'
17215 3' -55.5 NC_004333.2 + 41943 0.68 0.480456
Target:  5'- -gCGGCUACCugAACG-ACGCUgaGCAc -3'
miRNA:   3'- uaGUCGAUGGugUUGCgUGCGGa-CGU- -5'
17215 3' -55.5 NC_004333.2 + 7825 0.68 0.480456
Target:  5'- uUUAGCUcgcucGCCAgauCGACGCG-GCCUGCGc -3'
miRNA:   3'- uAGUCGA-----UGGU---GUUGCGUgCGGACGU- -5'
17215 3' -55.5 NC_004333.2 + 30293 0.68 0.480456
Target:  5'- -aCGGCgagcugGCCGC--CGuCGCGCCUGCGa -3'
miRNA:   3'- uaGUCGa-----UGGUGuuGC-GUGCGGACGU- -5'
17215 3' -55.5 NC_004333.2 + 18825 0.68 0.480456
Target:  5'- --gGGgaGCCGCAACGUGCGCgUGUu -3'
miRNA:   3'- uagUCgaUGGUGUUGCGUGCGgACGu -5'
17215 3' -55.5 NC_004333.2 + 18854 0.68 0.470019
Target:  5'- -gCAGUUGCCgugcGCAACGCAuugcCGCCgggGCGc -3'
miRNA:   3'- uaGUCGAUGG----UGUUGCGU----GCGGa--CGU- -5'
17215 3' -55.5 NC_004333.2 + 14791 0.68 0.463813
Target:  5'- uUCGGUUggccuuccaucuuucGCCGC-ACGCGCGCgaGCAg -3'
miRNA:   3'- uAGUCGA---------------UGGUGuUGCGUGCGgaCGU- -5'
17215 3' -55.5 NC_004333.2 + 21068 0.68 0.459699
Target:  5'- -aCGGCUGCCACGcgcucgaaACGCAcccacuCGCCcGCGc -3'
miRNA:   3'- uaGUCGAUGGUGU--------UGCGU------GCGGaCGU- -5'
17215 3' -55.5 NC_004333.2 + 36143 0.68 0.456626
Target:  5'- -cCGGCgcaACCuuCAACGCcucguugacguagaGCGCCUGCAc -3'
miRNA:   3'- uaGUCGa--UGGu-GUUGCG--------------UGCGGACGU- -5'
17215 3' -55.5 NC_004333.2 + 5678 0.69 0.4495
Target:  5'- --aAGCUGCCGCAcggccugaacguGCGCAUGCCcgaugGCc -3'
miRNA:   3'- uagUCGAUGGUGU------------UGCGUGCGGa----CGu -5'
17215 3' -55.5 NC_004333.2 + 12375 0.69 0.4495
Target:  5'- --aGGCUggcgcgcaggacGCCGCAAUGCGCGCCgccgGUg -3'
miRNA:   3'- uagUCGA------------UGGUGUUGCGUGCGGa---CGu -5'
17215 3' -55.5 NC_004333.2 + 33020 0.69 0.4495
Target:  5'- --aAGCUGCC-CGacGCGCACGCCUa-- -3'
miRNA:   3'- uagUCGAUGGuGU--UGCGUGCGGAcgu -5'
17215 3' -55.5 NC_004333.2 + 2655 0.69 0.429485
Target:  5'- -cCGGCguaucaGCCGCAACGCcgGCaGCUUGCAg -3'
miRNA:   3'- uaGUCGa-----UGGUGUUGCG--UG-CGGACGU- -5'
17215 3' -55.5 NC_004333.2 + 29083 0.69 0.419676
Target:  5'- uAUCGuGCUaGCCGCGcgcgauGCGCACGCCgacccgGCGg -3'
miRNA:   3'- -UAGU-CGA-UGGUGU------UGCGUGCGGa-----CGU- -5'
17215 3' -55.5 NC_004333.2 + 11822 0.69 0.410003
Target:  5'- cAUCAGC-GCgACGGCGCGCuccaGCUUGCGc -3'
miRNA:   3'- -UAGUCGaUGgUGUUGCGUG----CGGACGU- -5'
17215 3' -55.5 NC_004333.2 + 25374 0.69 0.410003
Target:  5'- cGUCGGUcugauucgACCACAucgagccauccgGCgaGCGCGCCUGCAg -3'
miRNA:   3'- -UAGUCGa-------UGGUGU------------UG--CGUGCGGACGU- -5'
17215 3' -55.5 NC_004333.2 + 39255 0.69 0.410003
Target:  5'- ---uGCUGCCgguGCAGCGCGCGCa-GCAc -3'
miRNA:   3'- uaguCGAUGG---UGUUGCGUGCGgaCGU- -5'
17215 3' -55.5 NC_004333.2 + 47805 0.69 0.400471
Target:  5'- --aGGCUGaucgUGCAGCGCGcCGCCUGCGg -3'
miRNA:   3'- uagUCGAUg---GUGUUGCGU-GCGGACGU- -5'
17215 3' -55.5 NC_004333.2 + 45253 0.7 0.391081
Target:  5'- -aCAGCUGCCGCuGCGCAUcaGCaaGCGc -3'
miRNA:   3'- uaGUCGAUGGUGuUGCGUG--CGgaCGU- -5'
17215 3' -55.5 NC_004333.2 + 2758 0.7 0.391081
Target:  5'- uGUCGGCcGCCGcCGGCGCgACG-CUGCAa -3'
miRNA:   3'- -UAGUCGaUGGU-GUUGCG-UGCgGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.