miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17215 5' -53.1 NC_004333.2 + 2745 0.68 0.685448
Target:  5'- cGGCGCGAcgcugcaagcugccgGCGUugcggcugauacGCCGGcaagCGCGAUGa- -3'
miRNA:   3'- -CCGCGCU---------------UGCA------------CGGCUa---GCGCUAUau -5'
17215 5' -53.1 NC_004333.2 + 31010 0.68 0.680994
Target:  5'- cGGCGUaucgccGGACGUGaUCG-UCGCGAUGa- -3'
miRNA:   3'- -CCGCG------CUUGCAC-GGCuAGCGCUAUau -5'
17215 5' -53.1 NC_004333.2 + 29119 0.68 0.658621
Target:  5'- cGGCGCGAuCGUgGgCGG-CGCGGUGc- -3'
miRNA:   3'- -CCGCGCUuGCA-CgGCUaGCGCUAUau -5'
17215 5' -53.1 NC_004333.2 + 12546 0.69 0.64739
Target:  5'- uGGaCGCGAaugacgacccggGCGUGCCGGccgacgacgauaUCGaCGGUGUGc -3'
miRNA:   3'- -CC-GCGCU------------UGCACGGCU------------AGC-GCUAUAU- -5'
17215 5' -53.1 NC_004333.2 + 11888 0.69 0.636145
Target:  5'- gGGCGCGAGCaccuUGUCG-UCGCGGc--- -3'
miRNA:   3'- -CCGCGCUUGc---ACGGCuAGCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 2757 0.69 0.636145
Target:  5'- -uCGCGGccgcCGUGCCGGUCGCGu---- -3'
miRNA:   3'- ccGCGCUu---GCACGGCUAGCGCuauau -5'
17215 5' -53.1 NC_004333.2 + 29897 0.69 0.624896
Target:  5'- uGCGCGAuCGgGCCGcgCGCGGc--- -3'
miRNA:   3'- cCGCGCUuGCaCGGCuaGCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 20733 0.69 0.624896
Target:  5'- cGGCGCGcGCGcUGCCGGacaUCGcCGAc--- -3'
miRNA:   3'- -CCGCGCuUGC-ACGGCU---AGC-GCUauau -5'
17215 5' -53.1 NC_004333.2 + 28682 0.69 0.602427
Target:  5'- cGGUGCGugcuGC-UGCCaGAUCGCGAg--- -3'
miRNA:   3'- -CCGCGCu---UGcACGG-CUAGCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 19965 0.69 0.602427
Target:  5'- cGGCGCGGAUGgcccagagcUGCUGAgCGCGGg--- -3'
miRNA:   3'- -CCGCGCUUGC---------ACGGCUaGCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 18278 0.69 0.602427
Target:  5'- cGGCGCGuauuGCGaUGCCGcgCGCa----- -3'
miRNA:   3'- -CCGCGCu---UGC-ACGGCuaGCGcuauau -5'
17215 5' -53.1 NC_004333.2 + 38559 0.7 0.591228
Target:  5'- aGGCGCu-GCGUGCCGucccAUUGCGGc--- -3'
miRNA:   3'- -CCGCGcuUGCACGGC----UAGCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 20312 0.7 0.591228
Target:  5'- cGGCGCGAuguagGCCaGUCGCGGUcgAu -3'
miRNA:   3'- -CCGCGCUugca-CGGcUAGCGCUAuaU- -5'
17215 5' -53.1 NC_004333.2 + 11974 0.7 0.580065
Target:  5'- cGCGCGucGACGaucgcgGCCGuAUCGCGGUGc- -3'
miRNA:   3'- cCGCGC--UUGCa-----CGGC-UAGCGCUAUau -5'
17215 5' -53.1 NC_004333.2 + 9605 0.7 0.580065
Target:  5'- cGGCGCGGcauCG-GCCGGUUGCGc---- -3'
miRNA:   3'- -CCGCGCUu--GCaCGGCUAGCGCuauau -5'
17215 5' -53.1 NC_004333.2 + 41632 0.7 0.580065
Target:  5'- uGGCGCGuugaaGCCGGUCGUGAg--- -3'
miRNA:   3'- -CCGCGCuugcaCGGCUAGCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 2371 0.7 0.576725
Target:  5'- -aCGCGGGCGUGCCGGccacgguacacgacUUGCGAc--- -3'
miRNA:   3'- ccGCGCUUGCACGGCU--------------AGCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 46850 0.7 0.557883
Target:  5'- cGCuuGGACGUGCCGAgcagCGCGGc--- -3'
miRNA:   3'- cCGcgCUUGCACGGCUa---GCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 19831 0.7 0.54688
Target:  5'- uGCGUugGAGCG-GCCGAUCGCGu---- -3'
miRNA:   3'- cCGCG--CUUGCaCGGCUAGCGCuauau -5'
17215 5' -53.1 NC_004333.2 + 18958 0.7 0.535948
Target:  5'- aGCGUGGACGUGgCGAacCGCGAg--- -3'
miRNA:   3'- cCGCGCUUGCACgGCUa-GCGCUauau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.