miRNA display CGI


Results 41 - 60 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17217 3' -55.5 NC_004333.2 + 42290 0.67 0.609773
Target:  5'- aCCGGCCGcaagGUGCCGAcCgaGGCGuauCGCGu -3'
miRNA:   3'- -GGCUGGU----UAUGGCUuGa-CCGCc--GCGC- -5'
17217 3' -55.5 NC_004333.2 + 30754 0.67 0.609773
Target:  5'- gCCG-CC---GCCG-GC-GGCGGCGCGa -3'
miRNA:   3'- -GGCuGGuuaUGGCuUGaCCGCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 29128 0.67 0.609773
Target:  5'- gCG-CCAAcucgGCgCGAuCgugGGCGGCGCGg -3'
miRNA:   3'- gGCuGGUUa---UG-GCUuGa--CCGCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 9503 0.67 0.609773
Target:  5'- aCGGCgA--ACCGGAC-GGCGuGCGCa -3'
miRNA:   3'- gGCUGgUuaUGGCUUGaCCGC-CGCGc -5'
17217 3' -55.5 NC_004333.2 + 45220 0.67 0.609773
Target:  5'- cCCGGCCAcgugcuugucgGUGCCGAcCUGuccggcaucgaaGCGcGCGUGg -3'
miRNA:   3'- -GGCUGGU-----------UAUGGCUuGAC------------CGC-CGCGC- -5'
17217 3' -55.5 NC_004333.2 + 1341 0.68 0.603219
Target:  5'- aCGAUCAcgGCCGGuugcaggauuuucuuGCcGGCGGCGg- -3'
miRNA:   3'- gGCUGGUuaUGGCU---------------UGaCCGCCGCgc -5'
17217 3' -55.5 NC_004333.2 + 6676 0.68 0.598854
Target:  5'- gCGACU---GCgGcGCUgGGCGGCGCGc -3'
miRNA:   3'- gGCUGGuuaUGgCuUGA-CCGCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 16891 0.68 0.598854
Target:  5'- aCGGCCGAcUGCCuGAuCUGGUgcccgGGCGCc -3'
miRNA:   3'- gGCUGGUU-AUGG-CUuGACCG-----CCGCGc -5'
17217 3' -55.5 NC_004333.2 + 25729 0.68 0.598854
Target:  5'- gCCGGCCA--GCUGcaGGCcGGuCGGCGUGa -3'
miRNA:   3'- -GGCUGGUuaUGGC--UUGaCC-GCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 320 0.68 0.598854
Target:  5'- aCGACCAc-AUCGAAC-GGCacGGCGUGg -3'
miRNA:   3'- gGCUGGUuaUGGCUUGaCCG--CCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 1424 0.68 0.598854
Target:  5'- gCCGACC---GCCGGAUUGGUGauCGUGa -3'
miRNA:   3'- -GGCUGGuuaUGGCUUGACCGCc-GCGC- -5'
17217 3' -55.5 NC_004333.2 + 16668 0.68 0.598854
Target:  5'- cCUGcCCGGUGCUGcACcGcGCGGUGCGg -3'
miRNA:   3'- -GGCuGGUUAUGGCuUGaC-CGCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 23696 0.68 0.598854
Target:  5'- gCCGGCgGAaaACCGAGCgauUGGCucGCGCGa -3'
miRNA:   3'- -GGCUGgUUa-UGGCUUG---ACCGc-CGCGC- -5'
17217 3' -55.5 NC_004333.2 + 44898 0.68 0.597764
Target:  5'- gCGGCCAgcGUcguccauguccucGCCGAGCgucGCGGCGUa -3'
miRNA:   3'- gGCUGGU--UA-------------UGGCUUGac-CGCCGCGc -5'
17217 3' -55.5 NC_004333.2 + 46724 0.68 0.587963
Target:  5'- gUCGACCAGUucacgaucACCGAACUGaccgacgcacuCGGCGuCGa -3'
miRNA:   3'- -GGCUGGUUA--------UGGCUUGACc----------GCCGC-GC- -5'
17217 3' -55.5 NC_004333.2 + 25943 0.68 0.587963
Target:  5'- gCGGCgCGAUGCCGGcgGCcaguacGCGGCGCu -3'
miRNA:   3'- gGCUG-GUUAUGGCU--UGac----CGCCGCGc -5'
17217 3' -55.5 NC_004333.2 + 47189 0.68 0.587963
Target:  5'- uCCGGCCAggAUGCgCGAuccggguaagGCUcagucgGaGCGGCGCGa -3'
miRNA:   3'- -GGCUGGU--UAUG-GCU----------UGA------C-CGCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 1360 0.68 0.577109
Target:  5'- gCCGAUCGcguaacgcaACCGcGCcaGGCGGCGCGc -3'
miRNA:   3'- -GGCUGGUua-------UGGCuUGa-CCGCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 20606 0.68 0.577109
Target:  5'- gCGGCCAuguuacagGCCGccAGC-GaGCGGCGCGg -3'
miRNA:   3'- gGCUGGUua------UGGC--UUGaC-CGCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 31340 0.68 0.573861
Target:  5'- gCCGGCCAGcuucaucagaccgcUGCCGAGCgacgcaGCcGCGCGu -3'
miRNA:   3'- -GGCUGGUU--------------AUGGCUUGac----CGcCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.