miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17217 3' -55.5 NC_004333.2 + 10553 0.67 0.620712
Target:  5'- aCGGCCAucgcgcguuUAUCGGGCgcaucgcaGGCGGUGCu -3'
miRNA:   3'- gGCUGGUu--------AUGGCUUGa-------CCGCCGCGc -5'
17217 3' -55.5 NC_004333.2 + 10626 0.74 0.289689
Target:  5'- cCCGACCGAUGCaaucaAGgUGGCGGCGa- -3'
miRNA:   3'- -GGCUGGUUAUGgc---UUgACCGCCGCgc -5'
17217 3' -55.5 NC_004333.2 + 10714 0.69 0.527876
Target:  5'- uUCGACgCGAUugacggucguuuucCCG-ACUGGCGGCGUa -3'
miRNA:   3'- -GGCUG-GUUAu-------------GGCuUGACCGCCGCGc -5'
17217 3' -55.5 NC_004333.2 + 11700 0.7 0.451383
Target:  5'- gUCGACgCAGcGCCGGgcggcguGCUGGCGuccuGCGCGa -3'
miRNA:   3'- -GGCUG-GUUaUGGCU-------UGACCGC----CGCGC- -5'
17217 3' -55.5 NC_004333.2 + 11928 0.7 0.436811
Target:  5'- gCCGACCGgcagacggaagcgauGUACCGGcgcaaGCUGGa-GCGCGc -3'
miRNA:   3'- -GGCUGGU---------------UAUGGCU-----UGACCgcCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 12273 0.7 0.462237
Target:  5'- gUCGACaacGUACaCGGcACcGGCGGCGCGc -3'
miRNA:   3'- -GGCUGgu-UAUG-GCU-UGaCCGCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 13074 0.7 0.442608
Target:  5'- aCGAuguCCGAcACCG-ACUGGCGuGUGCGc -3'
miRNA:   3'- gGCU---GGUUaUGGCuUGACCGC-CGCGC- -5'
17217 3' -55.5 NC_004333.2 + 13892 0.7 0.472222
Target:  5'- gUCGGCCG--GCaCGGGCUGcGCGGCGg- -3'
miRNA:   3'- -GGCUGGUuaUG-GCUUGAC-CGCCGCgc -5'
17217 3' -55.5 NC_004333.2 + 13948 0.71 0.386695
Target:  5'- gCCGGCCGAcuUCGcGCgGcGCGGCGCGc -3'
miRNA:   3'- -GGCUGGUUauGGCuUGaC-CGCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 13975 0.7 0.462237
Target:  5'- gCGGCCGGUGCgcgCGAGCU-GCGcGCGCu -3'
miRNA:   3'- gGCUGGUUAUG---GCUUGAcCGC-CGCGc -5'
17217 3' -55.5 NC_004333.2 + 14013 0.72 0.369119
Target:  5'- gUCG-CCAAggcgGCCacGCUGGCGGCaGCGg -3'
miRNA:   3'- -GGCuGGUUa---UGGcuUGACCGCCG-CGC- -5'
17217 3' -55.5 NC_004333.2 + 14221 0.67 0.631659
Target:  5'- uUCGACCAG-ACCcauGCgacGGCGuGCGCGc -3'
miRNA:   3'- -GGCUGGUUaUGGcu-UGa--CCGC-CGCGC- -5'
17217 3' -55.5 NC_004333.2 + 14505 0.76 0.196576
Target:  5'- aCGAgCGugugugGCUGAucgACUGGCGGCGCGa -3'
miRNA:   3'- gGCUgGUua----UGGCU---UGACCGCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 14641 0.72 0.352099
Target:  5'- gCCGACCAccagaAUucGCUGAugUuGCGGCGCa -3'
miRNA:   3'- -GGCUGGU-----UA--UGGCUugAcCGCCGCGc -5'
17217 3' -55.5 NC_004333.2 + 14853 0.66 0.718401
Target:  5'- gCCGAUCAGaaugacGCCGGagaGCUGcuGCaGGCGCGu -3'
miRNA:   3'- -GGCUGGUUa-----UGGCU---UGAC--CG-CCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 15268 0.75 0.230234
Target:  5'- gCGACgAuuUGCCGuGCUgcGGCGGCGCGg -3'
miRNA:   3'- gGCUGgUu-AUGGCuUGA--CCGCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 15464 0.67 0.618523
Target:  5'- gUCGAUCGgcgcgcuuggcGUGCCGAgcgcaacagggcuGCUcgcggcggucaccGGCGGCGCGu -3'
miRNA:   3'- -GGCUGGU-----------UAUGGCU-------------UGA-------------CCGCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 16668 0.68 0.598854
Target:  5'- cCUGcCCGGUGCUGcACcGcGCGGUGCGg -3'
miRNA:   3'- -GGCuGGUUAUGGCuUGaC-CGCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 16891 0.68 0.598854
Target:  5'- aCGGCCGAcUGCCuGAuCUGGUgcccgGGCGCc -3'
miRNA:   3'- gGCUGGUU-AUGG-CUuGACCG-----CCGCGc -5'
17217 3' -55.5 NC_004333.2 + 17580 0.67 0.653547
Target:  5'- gCGACCG--GCUGcAGCaGGuCGGUGCGg -3'
miRNA:   3'- gGCUGGUuaUGGC-UUGaCC-GCCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.