miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17217 3' -55.5 NC_004333.2 + 320 0.68 0.598854
Target:  5'- aCGACCAc-AUCGAAC-GGCacGGCGUGg -3'
miRNA:   3'- gGCUGGUuaUGGCUUGaCCG--CCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 349 0.71 0.423458
Target:  5'- aCGucGCCGugACCGuGCUcGGCGGCGUGa -3'
miRNA:   3'- gGC--UGGUuaUGGCuUGA-CCGCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 1341 0.68 0.603219
Target:  5'- aCGAUCAcgGCCGGuugcaggauuuucuuGCcGGCGGCGg- -3'
miRNA:   3'- gGCUGGUuaUGGCU---------------UGaCCGCCGCgc -5'
17217 3' -55.5 NC_004333.2 + 1360 0.68 0.577109
Target:  5'- gCCGAUCGcguaacgcaACCGcGCcaGGCGGCGCGc -3'
miRNA:   3'- -GGCUGGUua-------UGGCuUGa-CCGCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 1424 0.68 0.598854
Target:  5'- gCCGACC---GCCGGAUUGGUGauCGUGa -3'
miRNA:   3'- -GGCUGGuuaUGGCUUGACCGCc-GCGC- -5'
17217 3' -55.5 NC_004333.2 + 2309 0.67 0.653547
Target:  5'- gCCGGCacgcccgcGuuGAACUGGCGGaauGCGa -3'
miRNA:   3'- -GGCUGguua----UggCUUGACCGCCg--CGC- -5'
17217 3' -55.5 NC_004333.2 + 3317 0.72 0.342977
Target:  5'- aUCGACCAGaucgugcagaugcUGCCcggcgucaucgGGGCgGGCGGCGCGc -3'
miRNA:   3'- -GGCUGGUU-------------AUGG-----------CUUGaCCGCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 4093 0.66 0.718401
Target:  5'- gCCG-CCcuUACCGAGCg---GGCGCGa -3'
miRNA:   3'- -GGCuGGuuAUGGCUUGaccgCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 4832 0.71 0.390276
Target:  5'- -gGAUCGAUACCGuucgaugucggugaaAGCUGGCgugcucgcgGGCGCGa -3'
miRNA:   3'- ggCUGGUUAUGGC---------------UUGACCG---------CCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 5038 0.71 0.427248
Target:  5'- gCGGCCAGgcgGCCG-GCUGuuggccgacgucggcGCGGCGCu -3'
miRNA:   3'- gGCUGGUUa--UGGCuUGAC---------------CGCCGCGc -5'
17217 3' -55.5 NC_004333.2 + 5433 0.69 0.513191
Target:  5'- cCCGAUCGAcccgaagaauCCGGGCauccacGGCGGCGUGa -3'
miRNA:   3'- -GGCUGGUUau--------GGCUUGa-----CCGCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 6676 0.68 0.598854
Target:  5'- gCGACU---GCgGcGCUgGGCGGCGCGc -3'
miRNA:   3'- gGCUGGuuaUGgCuUGA-CCGCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 7690 0.66 0.718401
Target:  5'- cCCGACCAcgGCguCGuAGC-GGUgaucGGCGCGg -3'
miRNA:   3'- -GGCUGGUuaUG--GC-UUGaCCG----CCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 8016 0.66 0.707739
Target:  5'- gCGACUAcucguCCGAcgGCgacaGCGGCGCGa -3'
miRNA:   3'- gGCUGGUuau--GGCU--UGac--CGCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 8991 0.7 0.4813
Target:  5'- gCGGCgGcgACCGAcgcggcguucgcgGCUugccaGGCGGCGCGc -3'
miRNA:   3'- gGCUGgUuaUGGCU-------------UGA-----CCGCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 9219 0.67 0.632755
Target:  5'- aCCGACUucgcauccaucgcGCCGAAC-GGgGGCGCc -3'
miRNA:   3'- -GGCUGGuua----------UGGCUUGaCCgCCGCGc -5'
17217 3' -55.5 NC_004333.2 + 9440 0.67 0.631659
Target:  5'- gCCGuCCGGUucGCCGucCUGcGCaccaGGCGCGg -3'
miRNA:   3'- -GGCuGGUUA--UGGCuuGAC-CG----CCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 9503 0.67 0.609773
Target:  5'- aCGGCgA--ACCGGAC-GGCGuGCGCa -3'
miRNA:   3'- gGCUGgUuaUGGCUUGaCCGC-CGCGc -5'
17217 3' -55.5 NC_004333.2 + 9614 0.79 0.134358
Target:  5'- aUCGGCCGGUugcgcACCGGcuGCcGGCGGCGCGc -3'
miRNA:   3'- -GGCUGGUUA-----UGGCU--UGaCCGCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 9670 0.84 0.059046
Target:  5'- aCCGGCCGAUGCCGcGCcGGCuGGCGCu -3'
miRNA:   3'- -GGCUGGUUAUGGCuUGaCCG-CCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.