miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17217 3' -55.5 NC_004333.2 + 46681 1.1 0.000789
Target:  5'- aCCGACCAAUACCGAACUGGCGGCGCGc -3'
miRNA:   3'- -GGCUGGUUAUGGCUUGACCGCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 39245 0.71 0.423458
Target:  5'- cUCGACCGcaccCCGAGCggccGGCaGGCGCa -3'
miRNA:   3'- -GGCUGGUuau-GGCUUGa---CCG-CCGCGc -5'
17217 3' -55.5 NC_004333.2 + 13074 0.7 0.442608
Target:  5'- aCGAuguCCGAcACCG-ACUGGCGuGUGCGc -3'
miRNA:   3'- gGCU---GGUUaUGGCuUGACCGC-CGCGC- -5'
17217 3' -55.5 NC_004333.2 + 19596 0.66 0.718401
Target:  5'- gCGAUCAAcgACgCGAACaaggucacGGCGaGCGCGg -3'
miRNA:   3'- gGCUGGUUa-UG-GCUUGa-------CCGC-CGCGC- -5'
17217 3' -55.5 NC_004333.2 + 19491 0.78 0.15417
Target:  5'- gCGAUCGGcGCUGGcgcGCUGGCGGCGCu -3'
miRNA:   3'- gGCUGGUUaUGGCU---UGACCGCCGCGc -5'
17217 3' -55.5 NC_004333.2 + 36063 0.76 0.212834
Target:  5'- aCCGuCCGAUACgaCGAGCUGGCccgugacgcGGCGCu -3'
miRNA:   3'- -GGCuGGUUAUG--GCUUGACCG---------CCGCGc -5'
17217 3' -55.5 NC_004333.2 + 42698 0.75 0.24249
Target:  5'- gCCGGCCGA---CGAGCgGGCGGCGUu -3'
miRNA:   3'- -GGCUGGUUaugGCUUGaCCGCCGCGc -5'
17217 3' -55.5 NC_004333.2 + 44412 0.74 0.268628
Target:  5'- aCGGCC--UGCCGGgcucGCUGGCuGGUGCGu -3'
miRNA:   3'- gGCUGGuuAUGGCU----UGACCG-CCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 39640 0.72 0.342977
Target:  5'- gCCGACUGcUGCCGGacgcgaACUucacggucgccgaGGCGGCGCGc -3'
miRNA:   3'- -GGCUGGUuAUGGCU------UGA-------------CCGCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 22177 0.71 0.414071
Target:  5'- gCCGGCgGcgGCCGGcgGCgguucGGCGGCuGCGg -3'
miRNA:   3'- -GGCUGgUuaUGGCU--UGa----CCGCCG-CGC- -5'
17217 3' -55.5 NC_004333.2 + 26055 0.72 0.360539
Target:  5'- gCCGgauuuGCCAGUggcGCCGcAGC-GGCGGCGCu -3'
miRNA:   3'- -GGC-----UGGUUA---UGGC-UUGaCCGCCGCGc -5'
17217 3' -55.5 NC_004333.2 + 38348 0.73 0.304437
Target:  5'- gCCGACCGAaGCCGAACUGauCGaCGCGc -3'
miRNA:   3'- -GGCUGGUUaUGGCUUGACc-GCcGCGC- -5'
17217 3' -55.5 NC_004333.2 + 38985 0.81 0.090473
Target:  5'- aCCGGCCGAUcgacCCGAACUGGCaugucgaGGCGCu -3'
miRNA:   3'- -GGCUGGUUAu---GGCUUGACCG-------CCGCGc -5'
17217 3' -55.5 NC_004333.2 + 42979 0.72 0.369119
Target:  5'- gCCGGCgGA---CGAGCgGGCGGCGCu -3'
miRNA:   3'- -GGCUGgUUaugGCUUGaCCGCCGCGc -5'
17217 3' -55.5 NC_004333.2 + 45016 0.81 0.09073
Target:  5'- uCCGGCCGcucgACCGcgcguggcGCUGGCGGCGCGc -3'
miRNA:   3'- -GGCUGGUua--UGGCu-------UGACCGCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 10626 0.74 0.289689
Target:  5'- cCCGACCGAUGCaaucaAGgUGGCGGCGa- -3'
miRNA:   3'- -GGCUGGUUAUGgc---UUgACCGCCGCgc -5'
17217 3' -55.5 NC_004333.2 + 19818 0.71 0.386695
Target:  5'- gCUGACCGAUGCCGGcccgaucccuGCguauccuguccUGGCuucuGGCGCGa -3'
miRNA:   3'- -GGCUGGUUAUGGCU----------UG-----------ACCG----CCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 5038 0.71 0.427248
Target:  5'- gCGGCCAGgcgGCCG-GCUGuuggccgacgucggcGCGGCGCu -3'
miRNA:   3'- gGCUGGUUa--UGGCuUGAC---------------CGCCGCGc -5'
17217 3' -55.5 NC_004333.2 + 9614 0.79 0.134358
Target:  5'- aUCGGCCGGUugcgcACCGGcuGCcGGCGGCGCGc -3'
miRNA:   3'- -GGCUGGUUA-----UGGCU--UGaCCGCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 15268 0.75 0.230234
Target:  5'- gCGACgAuuUGCCGuGCUgcGGCGGCGCGg -3'
miRNA:   3'- gGCUGgUu-AUGGCuUGA--CCGCCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.