miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17217 3' -55.5 NC_004333.2 + 46681 1.1 0.000789
Target:  5'- aCCGACCAAUACCGAACUGGCGGCGCGc -3'
miRNA:   3'- -GGCUGGUUAUGGCUUGACCGCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 9670 0.84 0.059046
Target:  5'- aCCGGCCGAUGCCGcGCcGGCuGGCGCu -3'
miRNA:   3'- -GGCUGGUUAUGGCuUGaCCG-CCGCGc -5'
17217 3' -55.5 NC_004333.2 + 38985 0.81 0.090473
Target:  5'- aCCGGCCGAUcgacCCGAACUGGCaugucgaGGCGCu -3'
miRNA:   3'- -GGCUGGUUAu---GGCUUGACCG-------CCGCGc -5'
17217 3' -55.5 NC_004333.2 + 45016 0.81 0.09073
Target:  5'- uCCGGCCGcucgACCGcgcguggcGCUGGCGGCGCGc -3'
miRNA:   3'- -GGCUGGUua--UGGCu-------UGACCGCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 9614 0.79 0.134358
Target:  5'- aUCGGCCGGUugcgcACCGGcuGCcGGCGGCGCGc -3'
miRNA:   3'- -GGCUGGUUA-----UGGCU--UGaCCGCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 29905 0.78 0.150006
Target:  5'- aCGAUCAG--UCG-ACUGGCGGCGCGg -3'
miRNA:   3'- gGCUGGUUauGGCuUGACCGCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 19491 0.78 0.15417
Target:  5'- gCGAUCGGcGCUGGcgcGCUGGCGGCGCu -3'
miRNA:   3'- gGCUGGUUaUGGCU---UGACCGCCGCGc -5'
17217 3' -55.5 NC_004333.2 + 35312 0.77 0.186349
Target:  5'- uUCGACCAAUGCCGcACUG-CaGGCGCu -3'
miRNA:   3'- -GGCUGGUUAUGGCuUGACcG-CCGCGc -5'
17217 3' -55.5 NC_004333.2 + 14505 0.76 0.196576
Target:  5'- aCGAgCGugugugGCUGAucgACUGGCGGCGCGa -3'
miRNA:   3'- gGCUgGUua----UGGCU---UGACCGCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 23046 0.76 0.20729
Target:  5'- gCGACCGGUACCGcGACgcugccGGCGGCGa- -3'
miRNA:   3'- gGCUGGUUAUGGC-UUGa-----CCGCCGCgc -5'
17217 3' -55.5 NC_004333.2 + 36063 0.76 0.212834
Target:  5'- aCCGuCCGAUACgaCGAGCUGGCccgugacgcGGCGCu -3'
miRNA:   3'- -GGCuGGUUAUG--GCUUGACCG---------CCGCGc -5'
17217 3' -55.5 NC_004333.2 + 15268 0.75 0.230234
Target:  5'- gCGACgAuuUGCCGuGCUgcGGCGGCGCGg -3'
miRNA:   3'- gGCUGgUu-AUGGCuUGA--CCGCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 42698 0.75 0.24249
Target:  5'- gCCGGCCGA---CGAGCgGGCGGCGUu -3'
miRNA:   3'- -GGCUGGUUaugGCUUGaCCGCCGCGc -5'
17217 3' -55.5 NC_004333.2 + 44412 0.74 0.268628
Target:  5'- aCGGCC--UGCCGGgcucGCUGGCuGGUGCGu -3'
miRNA:   3'- gGCUGGuuAUGGCU----UGACCG-CCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 45668 0.74 0.26931
Target:  5'- aCCGACCGGcaucacgaucucgcgACCGGGCUGGuCGaGCGCc -3'
miRNA:   3'- -GGCUGGUUa--------------UGGCUUGACC-GC-CGCGc -5'
17217 3' -55.5 NC_004333.2 + 10626 0.74 0.289689
Target:  5'- cCCGACCGAUGCaaucaAGgUGGCGGCGa- -3'
miRNA:   3'- -GGCUGGUUAUGgc---UUgACCGCCGCgc -5'
17217 3' -55.5 NC_004333.2 + 38348 0.73 0.304437
Target:  5'- gCCGACCGAaGCCGAACUGauCGaCGCGc -3'
miRNA:   3'- -GGCUGGUUaUGGCUUGACc-GCcGCGC- -5'
17217 3' -55.5 NC_004333.2 + 23502 0.73 0.304437
Target:  5'- gUCGACCGAU-CCG-GCcGGCGGCGgGu -3'
miRNA:   3'- -GGCUGGUUAuGGCuUGaCCGCCGCgC- -5'
17217 3' -55.5 NC_004333.2 + 45227 0.73 0.319754
Target:  5'- gCGGCCAGUAUCGGGCcgacuucgGGCgacgacagguaGGCGCGa -3'
miRNA:   3'- gGCUGGUUAUGGCUUGa-------CCG-----------CCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 3317 0.72 0.342977
Target:  5'- aUCGACCAGaucgugcagaugcUGCCcggcgucaucgGGGCgGGCGGCGCGc -3'
miRNA:   3'- -GGCUGGUU-------------AUGG-----------CUUGaCCGCCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.