Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17217 | 5' | -54.3 | NC_004333.2 | + | 32731 | 0.67 | 0.714712 |
Target: 5'- aGCCGG-CGAgCAGaacgUCACGcgcagGUCGCUGc -3' miRNA: 3'- -CGGCCaGCUgGUCa---AGUGC-----UAGUGGC- -5' |
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17217 | 5' | -54.3 | NC_004333.2 | + | 28649 | 0.67 | 0.714712 |
Target: 5'- cGCCcaaGUCG-CCGGaUCGCGGUCGCa- -3' miRNA: 3'- -CGGc--CAGCuGGUCaAGUGCUAGUGgc -5' |
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17217 | 5' | -54.3 | NC_004333.2 | + | 4841 | 0.66 | 0.787034 |
Target: 5'- aGUCGGcUGACC-GUaCGCGcgCGCCGu -3' miRNA: 3'- -CGGCCaGCUGGuCAaGUGCuaGUGGC- -5' |
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17217 | 5' | -54.3 | NC_004333.2 | + | 14377 | 0.65 | 0.79292 |
Target: 5'- cGCUucaGGUCGGCaauugccugCGCGGUCGCCa -3' miRNA: 3'- -CGG---CCAGCUGgucaa----GUGCUAGUGGc -5' |
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17217 | 5' | -54.3 | NC_004333.2 | + | 29783 | 0.67 | 0.72538 |
Target: 5'- aGCUGGcgCGGgUcGUUCGCGAcgacggUCACCGg -3' miRNA: 3'- -CGGCCa-GCUgGuCAAGUGCU------AGUGGC- -5' |
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17217 | 5' | -54.3 | NC_004333.2 | + | 23247 | 0.66 | 0.756781 |
Target: 5'- cGCCGGUCGugUuGUUCGUGAcCGuCCa -3' miRNA: 3'- -CGGCCAGCugGuCAAGUGCUaGU-GGc -5' |
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17217 | 5' | -54.3 | NC_004333.2 | + | 7856 | 0.66 | 0.787034 |
Target: 5'- cGCCGGcCauuuCCAGcUCGCGcUCGCCc -3' miRNA: 3'- -CGGCCaGcu--GGUCaAGUGCuAGUGGc -5' |
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17217 | 5' | -54.3 | NC_004333.2 | + | 14899 | 0.68 | 0.664764 |
Target: 5'- aCCGaGUCGuACCAGUUUuccaagccguccuggACGAcCGCCGa -3' miRNA: 3'- cGGC-CAGC-UGGUCAAG---------------UGCUaGUGGC- -5' |
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17217 | 5' | -54.3 | NC_004333.2 | + | 22972 | 0.66 | 0.756781 |
Target: 5'- cGCCGGcagCGuCgCGGUaC-CGGUCGCCGa -3' miRNA: 3'- -CGGCCa--GCuG-GUCAaGuGCUAGUGGC- -5' |
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17217 | 5' | -54.3 | NC_004333.2 | + | 13970 | 0.67 | 0.735955 |
Target: 5'- aGgCGG-CGGCCGGUgcgCGCGAgCugCGc -3' miRNA: 3'- -CgGCCaGCUGGUCAa--GUGCUaGugGC- -5' |
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17217 | 5' | -54.3 | NC_004333.2 | + | 25443 | 0.66 | 0.746426 |
Target: 5'- cGCCGGgCGuGCCGGUUacgACGA-CACCc -3' miRNA: 3'- -CGGCCaGC-UGGUCAAg--UGCUaGUGGc -5' |
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17217 | 5' | -54.3 | NC_004333.2 | + | 18990 | 0.67 | 0.693143 |
Target: 5'- cGCCGGg-GGCCAuagCuCGAUCGCCa -3' miRNA: 3'- -CGGCCagCUGGUcaaGuGCUAGUGGc -5' |
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17217 | 5' | -54.3 | NC_004333.2 | + | 28772 | 0.66 | 0.763954 |
Target: 5'- uGCCGGaagUCGugCuGcUCGCGAUCuggcagcagcacgcACCGg -3' miRNA: 3'- -CGGCC---AGCugGuCaAGUGCUAG--------------UGGC- -5' |
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17217 | 5' | -54.3 | NC_004333.2 | + | 24377 | 0.73 | 0.373174 |
Target: 5'- gGUCGGUCGcggcuguuCCAGgUCGCGcaGUCGCCGg -3' miRNA: 3'- -CGGCCAGCu-------GGUCaAGUGC--UAGUGGC- -5' |
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17217 | 5' | -54.3 | NC_004333.2 | + | 39047 | 0.76 | 0.238544 |
Target: 5'- gGUCGaUCGGCCGGUUCACGAaCACgGg -3' miRNA: 3'- -CGGCcAGCUGGUCAAGUGCUaGUGgC- -5' |
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17217 | 5' | -54.3 | NC_004333.2 | + | 38375 | 0.76 | 0.2324 |
Target: 5'- cGCCGGUCG-CCGcGUgCACGGUCGCgCGu -3' miRNA: 3'- -CGGCCAGCuGGU-CAaGUGCUAGUG-GC- -5' |
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17217 | 5' | -54.3 | NC_004333.2 | + | 4351 | 0.67 | 0.739108 |
Target: 5'- aGCCGGgcacgauguugugUCGACCGGgcgCACGAacgugcgcggcauccUCacGCCGa -3' miRNA: 3'- -CGGCC-------------AGCUGGUCaa-GUGCU---------------AG--UGGC- -5' |
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17217 | 5' | -54.3 | NC_004333.2 | + | 13997 | 0.68 | 0.649385 |
Target: 5'- cGCUGG-CGGCagcGgcCACGAUCGCCa -3' miRNA: 3'- -CGGCCaGCUGgu-CaaGUGCUAGUGGc -5' |
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17217 | 5' | -54.3 | NC_004333.2 | + | 20814 | 0.67 | 0.693143 |
Target: 5'- aGCCGcGUCGGcgauguCCGGcagCGCGcgCGCCGu -3' miRNA: 3'- -CGGC-CAGCU------GGUCaa-GUGCuaGUGGC- -5' |
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17217 | 5' | -54.3 | NC_004333.2 | + | 27809 | 0.67 | 0.703963 |
Target: 5'- cGgCGGcCGACCAGaUUCgcgccGCGAUCGCg- -3' miRNA: 3'- -CgGCCaGCUGGUC-AAG-----UGCUAGUGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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