miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17217 5' -54.3 NC_004333.2 + 46719 1.11 0.000923
Target:  5'- uGCCGGUCGACCAGUUCACGAUCACCGa -3'
miRNA:   3'- -CGGCCAGCUGGUCAAGUGCUAGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 14899 0.68 0.664764
Target:  5'- aCCGaGUCGuACCAGUUUuccaagccguccuggACGAcCGCCGa -3'
miRNA:   3'- cGGC-CAGC-UGGUCAAG---------------UGCUaGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 28649 0.67 0.714712
Target:  5'- cGCCcaaGUCG-CCGGaUCGCGGUCGCa- -3'
miRNA:   3'- -CGGc--CAGCuGGUCaAGUGCUAGUGgc -5'
17217 5' -54.3 NC_004333.2 + 14377 0.65 0.79292
Target:  5'- cGCUucaGGUCGGCaauugccugCGCGGUCGCCa -3'
miRNA:   3'- -CGG---CCAGCUGgucaa----GUGCUAGUGGc -5'
17217 5' -54.3 NC_004333.2 + 33878 0.74 0.33925
Target:  5'- aGCCGaGUCGGCCAGcgacagcggUGCGGUUGCCGu -3'
miRNA:   3'- -CGGC-CAGCUGGUCaa-------GUGCUAGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 35981 0.74 0.33925
Target:  5'- aCCGuGcucgCGACCuGGUUCGCGGUCGCCu -3'
miRNA:   3'- cGGC-Ca---GCUGG-UCAAGUGCUAGUGGc -5'
17217 5' -54.3 NC_004333.2 + 32798 0.71 0.467449
Target:  5'- aCCGGgaugUCGAgCGGUUCGCGAUCAgUCa -3'
miRNA:   3'- cGGCC----AGCUgGUCAAGUGCUAGU-GGc -5'
17217 5' -54.3 NC_004333.2 + 31215 0.71 0.487753
Target:  5'- uGCCGGUUGgucauGCCGG-UCGCGAcgGCCGc -3'
miRNA:   3'- -CGGCCAGC-----UGGUCaAGUGCUagUGGC- -5'
17217 5' -54.3 NC_004333.2 + 20462 0.69 0.560631
Target:  5'- cGCCGGUCGugacgcaGCCGGUUaGCG-UC-CCGg -3'
miRNA:   3'- -CGGCCAGC-------UGGUCAAgUGCuAGuGGC- -5'
17217 5' -54.3 NC_004333.2 + 1856 0.68 0.649385
Target:  5'- gGCCGGugUCGugCGGUUC-UGAcgCGCCu -3'
miRNA:   3'- -CGGCC--AGCugGUCAAGuGCUa-GUGGc -5'
17217 5' -54.3 NC_004333.2 + 37574 0.69 0.566046
Target:  5'- cGuuGGUCuACCAGccgUCACGGuugauguucgaaucgUCGCCGg -3'
miRNA:   3'- -CggCCAGcUGGUCa--AGUGCU---------------AGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 47508 0.7 0.55092
Target:  5'- gGCCGGcgCGACCAGUaCAuUGAaugcacUCGCCa -3'
miRNA:   3'- -CGGCCa-GCUGGUCAaGU-GCU------AGUGGc -5'
17217 5' -54.3 NC_004333.2 + 11871 0.78 0.178044
Target:  5'- uGCCGGUCGGCCGaaacGggCGCGAgCACCu -3'
miRNA:   3'- -CGGCCAGCUGGU----CaaGUGCUaGUGGc -5'
17217 5' -54.3 NC_004333.2 + 39057 0.69 0.605367
Target:  5'- aGCCGGaCGGCgAGUacgCGCGAcucgugCGCCGu -3'
miRNA:   3'- -CGGCCaGCUGgUCAa--GUGCUa-----GUGGC- -5'
17217 5' -54.3 NC_004333.2 + 25952 0.77 0.209145
Target:  5'- uGCCGG-CGGCCAGUaCGCGG-CGCUGg -3'
miRNA:   3'- -CGGCCaGCUGGUCAaGUGCUaGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 5391 0.7 0.529536
Target:  5'- aGCCGGcgUUGACCuGUUCGCGuucuUCuGCCa -3'
miRNA:   3'- -CGGCC--AGCUGGuCAAGUGCu---AG-UGGc -5'
17217 5' -54.3 NC_004333.2 + 9602 0.68 0.637278
Target:  5'- aGCCGGcgcggcaUCGGCCGGUU-GCG--CACCGg -3'
miRNA:   3'- -CGGCC-------AGCUGGUCAAgUGCuaGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 32731 0.67 0.714712
Target:  5'- aGCCGG-CGAgCAGaacgUCACGcgcagGUCGCUGc -3'
miRNA:   3'- -CGGCCaGCUgGUCa---AGUGC-----UAGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 28737 0.74 0.33925
Target:  5'- cGCaGGUCGGCCAGcaacugCGCGAgCGCCGc -3'
miRNA:   3'- -CGgCCAGCUGGUCaa----GUGCUaGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 39649 0.72 0.44759
Target:  5'- uGCCGGacgCGAac--UUCACGGUCGCCGa -3'
miRNA:   3'- -CGGCCa--GCUggucAAGUGCUAGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.