miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17217 5' -54.3 NC_004333.2 + 1856 0.68 0.649385
Target:  5'- gGCCGGugUCGugCGGUUC-UGAcgCGCCu -3'
miRNA:   3'- -CGGCC--AGCugGUCAAGuGCUa-GUGGc -5'
17217 5' -54.3 NC_004333.2 + 2940 0.67 0.735955
Target:  5'- cGCCGcugCGACgucGUUCGCGAaCGCCGc -3'
miRNA:   3'- -CGGCca-GCUGgu-CAAGUGCUaGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 3441 0.67 0.703963
Target:  5'- cGCCGGUCGACauuGUUCcgcuCGAUUgauUCGa -3'
miRNA:   3'- -CGGCCAGCUGgu-CAAGu---GCUAGu--GGC- -5'
17217 5' -54.3 NC_004333.2 + 3761 0.66 0.790965
Target:  5'- uGCCGuacagcGUCGACguGgcguucugaucggccUUCGCGAUCugCGc -3'
miRNA:   3'- -CGGC------CAGCUGguC---------------AAGUGCUAGugGC- -5'
17217 5' -54.3 NC_004333.2 + 4351 0.67 0.739108
Target:  5'- aGCCGGgcacgauguugugUCGACCGGgcgCACGAacgugcgcggcauccUCacGCCGa -3'
miRNA:   3'- -CGGCC-------------AGCUGGUCaa-GUGCU---------------AG--UGGC- -5'
17217 5' -54.3 NC_004333.2 + 4665 0.72 0.437837
Target:  5'- uGCCGGcgCGGCC-GUUCauggaaaagACGAUUGCCGa -3'
miRNA:   3'- -CGGCCa-GCUGGuCAAG---------UGCUAGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 4841 0.66 0.787034
Target:  5'- aGUCGGcUGACC-GUaCGCGcgCGCCGu -3'
miRNA:   3'- -CGGCCaGCUGGuCAaGUGCuaGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 5391 0.7 0.529536
Target:  5'- aGCCGGcgUUGACCuGUUCGCGuucuUCuGCCa -3'
miRNA:   3'- -CGGCC--AGCUGGuCAAGUGCu---AG-UGGc -5'
17217 5' -54.3 NC_004333.2 + 7856 0.66 0.787034
Target:  5'- cGCCGGcCauuuCCAGcUCGCGcUCGCCc -3'
miRNA:   3'- -CGGCCaGcu--GGUCaAGUGCuAGUGGc -5'
17217 5' -54.3 NC_004333.2 + 9602 0.68 0.637278
Target:  5'- aGCCGGcgcggcaUCGGCCGGUU-GCG--CACCGg -3'
miRNA:   3'- -CGGCC-------AGCUGGUCAAgUGCuaGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 11806 0.68 0.638379
Target:  5'- uGCCGGUCGgcuGCCGGacaUCGCGcaggaCGCCa -3'
miRNA:   3'- -CGGCCAGC---UGGUCa--AGUGCua---GUGGc -5'
17217 5' -54.3 NC_004333.2 + 11871 0.78 0.178044
Target:  5'- uGCCGGUCGGCCGaaacGggCGCGAgCACCu -3'
miRNA:   3'- -CGGCCAGCUGGU----CaaGUGCUaGUGGc -5'
17217 5' -54.3 NC_004333.2 + 13970 0.67 0.735955
Target:  5'- aGgCGG-CGGCCGGUgcgCGCGAgCugCGc -3'
miRNA:   3'- -CgGCCaGCUGGUCAa--GUGCUaGugGC- -5'
17217 5' -54.3 NC_004333.2 + 13997 0.68 0.649385
Target:  5'- cGCUGG-CGGCagcGgcCACGAUCGCCa -3'
miRNA:   3'- -CGGCCaGCUGgu-CaaGUGCUAGUGGc -5'
17217 5' -54.3 NC_004333.2 + 14377 0.65 0.79292
Target:  5'- cGCUucaGGUCGGCaauugccugCGCGGUCGCCa -3'
miRNA:   3'- -CGG---CCAGCUGgucaa----GUGCUAGUGGc -5'
17217 5' -54.3 NC_004333.2 + 14899 0.68 0.664764
Target:  5'- aCCGaGUCGuACCAGUUUuccaagccguccuggACGAcCGCCGa -3'
miRNA:   3'- cGGC-CAGC-UGGUCAAG---------------UGCUaGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 18656 0.68 0.649385
Target:  5'- cGCCGGUCGuuuguugcacgaACgGGUUCG-GAUuCGCCGc -3'
miRNA:   3'- -CGGCCAGC------------UGgUCAAGUgCUA-GUGGC- -5'
17217 5' -54.3 NC_004333.2 + 18990 0.67 0.693143
Target:  5'- cGCCGGg-GGCCAuagCuCGAUCGCCa -3'
miRNA:   3'- -CGGCCagCUGGUcaaGuGCUAGUGGc -5'
17217 5' -54.3 NC_004333.2 + 20462 0.69 0.560631
Target:  5'- cGCCGGUCGugacgcaGCCGGUUaGCG-UC-CCGg -3'
miRNA:   3'- -CGGCCAGC-------UGGUCAAgUGCuAGuGGC- -5'
17217 5' -54.3 NC_004333.2 + 20814 0.67 0.693143
Target:  5'- aGCCGcGUCGGcgauguCCGGcagCGCGcgCGCCGu -3'
miRNA:   3'- -CGGC-CAGCU------GGUCaa-GUGCuaGUGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.