miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17217 5' -54.3 NC_004333.2 + 46719 1.11 0.000923
Target:  5'- uGCCGGUCGACCAGUUCACGAUCACCGa -3'
miRNA:   3'- -CGGCCAGCUGGUCAAGUGCUAGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 11871 0.78 0.178044
Target:  5'- uGCCGGUCGGCCGaaacGggCGCGAgCACCu -3'
miRNA:   3'- -CGGCCAGCUGGU----CaaGUGCUaGUGGc -5'
17217 5' -54.3 NC_004333.2 + 25952 0.77 0.209145
Target:  5'- uGCCGG-CGGCCAGUaCGCGG-CGCUGg -3'
miRNA:   3'- -CGGCCaGCUGGUCAaGUGCUaGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 38375 0.76 0.2324
Target:  5'- cGCCGGUCG-CCGcGUgCACGGUCGCgCGu -3'
miRNA:   3'- -CGGCCAGCuGGU-CAaGUGCUAGUG-GC- -5'
17217 5' -54.3 NC_004333.2 + 39047 0.76 0.238544
Target:  5'- gGUCGaUCGGCCGGUUCACGAaCACgGg -3'
miRNA:   3'- -CGGCcAGCUGGUCAAGUGCUaGUGgC- -5'
17217 5' -54.3 NC_004333.2 + 35981 0.74 0.33925
Target:  5'- aCCGuGcucgCGACCuGGUUCGCGGUCGCCu -3'
miRNA:   3'- cGGC-Ca---GCUGG-UCAAGUGCUAGUGGc -5'
17217 5' -54.3 NC_004333.2 + 28737 0.74 0.33925
Target:  5'- cGCaGGUCGGCCAGcaacugCGCGAgCGCCGc -3'
miRNA:   3'- -CGgCCAGCUGGUCaa----GUGCUaGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 33878 0.74 0.33925
Target:  5'- aGCCGaGUCGGCCAGcgacagcggUGCGGUUGCCGu -3'
miRNA:   3'- -CGGC-CAGCUGGUCaa-------GUGCUAGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 24377 0.73 0.373174
Target:  5'- gGUCGGUCGcggcuguuCCAGgUCGCGcaGUCGCCGg -3'
miRNA:   3'- -CGGCCAGCu-------GGUCaAGUGC--UAGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 40919 0.72 0.428207
Target:  5'- cGCCGG-CGACCAGaagGCGcgCGCCu -3'
miRNA:   3'- -CGGCCaGCUGGUCaagUGCuaGUGGc -5'
17217 5' -54.3 NC_004333.2 + 4665 0.72 0.437837
Target:  5'- uGCCGGcgCGGCC-GUUCauggaaaagACGAUUGCCGa -3'
miRNA:   3'- -CGGCCa-GCUGGuCAAG---------UGCUAGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 39649 0.72 0.44759
Target:  5'- uGCCGGacgCGAac--UUCACGGUCGCCGa -3'
miRNA:   3'- -CGGCCa--GCUggucAAGUGCUAGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 32798 0.71 0.467449
Target:  5'- aCCGGgaugUCGAgCGGUUCGCGAUCAgUCa -3'
miRNA:   3'- cGGCC----AGCUgGUCAAGUGCUAGU-GGc -5'
17217 5' -54.3 NC_004333.2 + 31215 0.71 0.487753
Target:  5'- uGCCGGUUGgucauGCCGG-UCGCGAcgGCCGc -3'
miRNA:   3'- -CGGCCAGC-----UGGUCaAGUGCUagUGGC- -5'
17217 5' -54.3 NC_004333.2 + 25368 0.7 0.518958
Target:  5'- cGCCGGcgUCGGcCCGGUU-GCGA-CGCCGa -3'
miRNA:   3'- -CGGCC--AGCU-GGUCAAgUGCUaGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 5391 0.7 0.529536
Target:  5'- aGCCGGcgUUGACCuGUUCGCGuucuUCuGCCa -3'
miRNA:   3'- -CGGCC--AGCUGGuCAAGUGCu---AG-UGGc -5'
17217 5' -54.3 NC_004333.2 + 47508 0.7 0.55092
Target:  5'- gGCCGGcgCGACCAGUaCAuUGAaugcacUCGCCa -3'
miRNA:   3'- -CGGCCa-GCUGGUCAaGU-GCU------AGUGGc -5'
17217 5' -54.3 NC_004333.2 + 20462 0.69 0.560631
Target:  5'- cGCCGGUCGugacgcaGCCGGUUaGCG-UC-CCGg -3'
miRNA:   3'- -CGGCCAGC-------UGGUCAAgUGCuAGuGGC- -5'
17217 5' -54.3 NC_004333.2 + 28976 0.69 0.561713
Target:  5'- -gCGG-CGAUCAGUUgCGCGGcCGCCGg -3'
miRNA:   3'- cgGCCaGCUGGUCAA-GUGCUaGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 37574 0.69 0.566046
Target:  5'- cGuuGGUCuACCAGccgUCACGGuugauguucgaaucgUCGCCGg -3'
miRNA:   3'- -CggCCAGcUGGUCa--AGUGCU---------------AGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.