miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17218 3' -53 NC_004333.2 + 25519 0.66 0.820739
Target:  5'- cGgGUGUCGUCguaACCGgcacgcccgGCGUGACGg -3'
miRNA:   3'- -CgCACGGCAGauaUGGCa--------CGCGUUGU- -5'
17218 3' -53 NC_004333.2 + 38484 0.66 0.81022
Target:  5'- aGCGUcucgaucGCCGUCUugACCGUG-GcCGGCGu -3'
miRNA:   3'- -CGCA-------CGGCAGAuaUGGCACgC-GUUGU- -5'
17218 3' -53 NC_004333.2 + 40179 0.66 0.801437
Target:  5'- aGCGUGCCaUC-AUGCCGccuugGcCGCAugGa -3'
miRNA:   3'- -CGCACGGcAGaUAUGGCa----C-GCGUugU- -5'
17218 3' -53 NC_004333.2 + 11982 0.66 0.791501
Target:  5'- cGCGcGCCG-CUgcgcAUGCCGgGCcGCGACGa -3'
miRNA:   3'- -CGCaCGGCaGA----UAUGGCaCG-CGUUGU- -5'
17218 3' -53 NC_004333.2 + 18558 0.66 0.787477
Target:  5'- gGCGUGCCGgcaacggCggguacgccuccgGUGCCGgguUGCGCGAa- -3'
miRNA:   3'- -CGCACGGCa------Ga------------UAUGGC---ACGCGUUgu -5'
17218 3' -53 NC_004333.2 + 48073 0.66 0.78139
Target:  5'- uCGUGCUGcUCgGUGCCGacgagGCGCAggcgGCAa -3'
miRNA:   3'- cGCACGGC-AGaUAUGGCa----CGCGU----UGU- -5'
17218 3' -53 NC_004333.2 + 35970 0.66 0.78139
Target:  5'- ---aGCCGUCgagcACCGUGCucGCGACc -3'
miRNA:   3'- cgcaCGGCAGaua-UGGCACG--CGUUGu -5'
17218 3' -53 NC_004333.2 + 18369 0.67 0.76488
Target:  5'- gGCGUGUCGUUUAaccucgccggcaucaUGCuCGUgccguccgaaGCGCAACGc -3'
miRNA:   3'- -CGCACGGCAGAU---------------AUG-GCA----------CGCGUUGU- -5'
17218 3' -53 NC_004333.2 + 19630 0.67 0.760694
Target:  5'- uUGUGCCG-CgccgACCGUGCGacCGGCGc -3'
miRNA:   3'- cGCACGGCaGaua-UGGCACGC--GUUGU- -5'
17218 3' -53 NC_004333.2 + 2996 0.67 0.758592
Target:  5'- aGCG-GCaCGUUgacggucacgACCGcUGCGCAGCAc -3'
miRNA:   3'- -CGCaCG-GCAGaua-------UGGC-ACGCGUUGU- -5'
17218 3' -53 NC_004333.2 + 2366 0.67 0.739443
Target:  5'- gGCGUGCCGgccacgGUACaCGacuUGCGaCGGCAa -3'
miRNA:   3'- -CGCACGGCaga---UAUG-GC---ACGC-GUUGU- -5'
17218 3' -53 NC_004333.2 + 22032 0.67 0.728641
Target:  5'- uGCGgGCCGUUUGUcguuUC-UGCGCAACGu -3'
miRNA:   3'- -CGCaCGGCAGAUAu---GGcACGCGUUGU- -5'
17218 3' -53 NC_004333.2 + 10268 0.67 0.728641
Target:  5'- aCG-GCCG-C-AUGCgCGUGCGCGACu -3'
miRNA:   3'- cGCaCGGCaGaUAUG-GCACGCGUUGu -5'
17218 3' -53 NC_004333.2 + 29892 0.68 0.706746
Target:  5'- aGCGcUGCgCGaUCgg-GCCGcGCGCGGCAu -3'
miRNA:   3'- -CGC-ACG-GC-AGauaUGGCaCGCGUUGU- -5'
17218 3' -53 NC_004333.2 + 30062 0.68 0.706746
Target:  5'- cCGUGCCaaagcgcggGUCgAUGCCGUaGCGcCGACGg -3'
miRNA:   3'- cGCACGG---------CAGaUAUGGCA-CGC-GUUGU- -5'
17218 3' -53 NC_004333.2 + 46901 0.68 0.705642
Target:  5'- uUGUGCCGUUcgAUGCCGagcacguucguguUGCGCAc-- -3'
miRNA:   3'- cGCACGGCAGa-UAUGGC-------------ACGCGUugu -5'
17218 3' -53 NC_004333.2 + 36959 0.68 0.695677
Target:  5'- cGCGUGCCGUCcaguaaaGCCaauugGCGCAGu- -3'
miRNA:   3'- -CGCACGGCAGaua----UGGca---CGCGUUgu -5'
17218 3' -53 NC_004333.2 + 37429 0.68 0.684544
Target:  5'- gGCGUGCaCGU--GUACUGcgGCGUGACGa -3'
miRNA:   3'- -CGCACG-GCAgaUAUGGCa-CGCGUUGU- -5'
17218 3' -53 NC_004333.2 + 1119 0.68 0.684544
Target:  5'- cGCGcGCgaaGUCgGUGCCGUgcugcGCGCGACGu -3'
miRNA:   3'- -CGCaCGg--CAGaUAUGGCA-----CGCGUUGU- -5'
17218 3' -53 NC_004333.2 + 2278 0.68 0.673357
Target:  5'- cGCGUuuGCCGUCggcaagucgUGUACCGUG-GcCGGCAc -3'
miRNA:   3'- -CGCA--CGGCAG---------AUAUGGCACgC-GUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.