Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
17272 | 3' | -45.9 | NC_004367.1 | + | 45963 | 0.66 | 0.999972 |
Target: 5'- uUGGAGGGugcguUUAGCACGgagcuuaUGggUGAUGCu -3' miRNA: 3'- gACCUUCUc----AAUCGUGU-------ACa-ACUACG- -5' |
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17272 | 3' | -45.9 | NC_004367.1 | + | 45466 | 0.66 | 0.999972 |
Target: 5'- aUGGAggagauaAGAGUUugGGUACAUGUg---GCa -3' miRNA: 3'- gACCU-------UCUCAA--UCGUGUACAacuaCG- -5' |
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17272 | 3' | -45.9 | NC_004367.1 | + | 35095 | 0.67 | 0.999884 |
Target: 5'- gUGGu-GAG--GGCACGUGUUGAaaacUGUg -3' miRNA: 3'- gACCuuCUCaaUCGUGUACAACU----ACG- -5' |
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17272 | 3' | -45.9 | NC_004367.1 | + | 136724 | 0.67 | 0.999745 |
Target: 5'- gUGGAAGcaaggaacacauAGUUAGaCACAUGgauaGAUGUu -3' miRNA: 3'- gACCUUC------------UCAAUC-GUGUACaa--CUACG- -5' |
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17272 | 3' | -45.9 | NC_004367.1 | + | 11609 | 0.67 | 0.999745 |
Target: 5'- -cGGAAGAGUauGCGCGUcUUGG-GCu -3' miRNA: 3'- gaCCUUCUCAauCGUGUAcAACUaCG- -5' |
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17272 | 3' | -45.9 | NC_004367.1 | + | 70031 | 0.69 | 0.999189 |
Target: 5'- gUGGAAGAGgcggUAGC-CGUGggaGAgGCg -3' miRNA: 3'- gACCUUCUCa---AUCGuGUACaa-CUaCG- -5' |
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17272 | 3' | -45.9 | NC_004367.1 | + | 20605 | 0.69 | 0.998999 |
Target: 5'- -gGGAAGGGUUaAGCACAa--UGAUGa -3' miRNA: 3'- gaCCUUCUCAA-UCGUGUacaACUACg -5' |
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17272 | 3' | -45.9 | NC_004367.1 | + | 40252 | 0.74 | 0.968339 |
Target: 5'- uUGGAGGGGaUAGCAUcggggaguAUGUcGAUGCu -3' miRNA: 3'- gACCUUCUCaAUCGUG--------UACAaCUACG- -5' |
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17272 | 3' | -45.9 | NC_004367.1 | + | 108793 | 0.76 | 0.92224 |
Target: 5'- -gGGAGGAGaugaagcGCACAUGaUGAUGCu -3' miRNA: 3'- gaCCUUCUCaau----CGUGUACaACUACG- -5' |
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17272 | 3' | -45.9 | NC_004367.1 | + | 11375 | 0.76 | 0.916113 |
Target: 5'- gUGGggGAGUUGGCGguguCAggggGUUGGUcGCg -3' miRNA: 3'- gACCuuCUCAAUCGU----GUa---CAACUA-CG- -5' |
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17272 | 3' | -45.9 | NC_004367.1 | + | 20820 | 1.13 | 0.014636 |
Target: 5'- cCUGGAAGAGUUAGCACAUGUUGAUGCc -3' miRNA: 3'- -GACCUUCUCAAUCGUGUACAACUACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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