miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17279 3' -53.4 NC_004367.1 + 124748 0.66 0.970304
Target:  5'- ---aCCGGcuUCAGGCCU-CCACUUa -3'
miRNA:   3'- gaaaGGCCcuAGUCUGGAgGGUGAAg -5'
17279 3' -53.4 NC_004367.1 + 121348 0.67 0.952713
Target:  5'- --aUCCGGGAgcCGGGCC-CCCucugccGCUUUg -3'
miRNA:   3'- gaaAGGCCCUa-GUCUGGaGGG------UGAAG- -5'
17279 3' -53.4 NC_004367.1 + 124257 0.67 0.952713
Target:  5'- --aUCCGGGAgcCGGGCC-CCCucugccGCUUUg -3'
miRNA:   3'- gaaAGGCCCUa-GUCUGGaGGG------UGAAG- -5'
17279 3' -53.4 NC_004367.1 + 127166 0.67 0.952713
Target:  5'- --aUCCGGGAgcCGGGCC-CCCucugccGCUUUg -3'
miRNA:   3'- gaaAGGCCCUa-GUCUGGaGGG------UGAAG- -5'
17279 3' -53.4 NC_004367.1 + 130075 0.67 0.952713
Target:  5'- --aUCCGGGAgcCGGGCC-CCCucugccGCUUUg -3'
miRNA:   3'- gaaAGGCCCUa-GUCUGGaGGG------UGAAG- -5'
17279 3' -53.4 NC_004367.1 + 46293 0.67 0.929195
Target:  5'- --aUUCGGGGUCAGACaUUUCAcCUUCu -3'
miRNA:   3'- gaaAGGCCCUAGUCUGgAGGGU-GAAG- -5'
17279 3' -53.4 NC_004367.1 + 97252 0.68 0.92375
Target:  5'- gUUUCUGGGAUCAGcuGCCUUgUACc-- -3'
miRNA:   3'- gAAAGGCCCUAGUC--UGGAGgGUGaag -5'
17279 3' -53.4 NC_004367.1 + 117267 0.68 0.918056
Target:  5'- ---nCCGGGugccCAGGCCUCCCGg--- -3'
miRNA:   3'- gaaaGGCCCua--GUCUGGAGGGUgaag -5'
17279 3' -53.4 NC_004367.1 + 117215 0.68 0.918056
Target:  5'- ---nCCGGGugccCAGGCCUCCCGg--- -3'
miRNA:   3'- gaaaGGCCCua--GUCUGGAGGGUgaag -5'
17279 3' -53.4 NC_004367.1 + 117163 0.68 0.918056
Target:  5'- ---nCCGGGugccCAGGCCUCCCGg--- -3'
miRNA:   3'- gaaaGGCCCua--GUCUGGAGGGUgaag -5'
17279 3' -53.4 NC_004367.1 + 117111 0.68 0.918056
Target:  5'- ---nCCGGGugccCAGGCCUCCCGg--- -3'
miRNA:   3'- gaaaGGCCCua--GUCUGGAGGGUgaag -5'
17279 3' -53.4 NC_004367.1 + 117059 0.68 0.918056
Target:  5'- ---nCCGGGugccCAGGCCUCCCGg--- -3'
miRNA:   3'- gaaaGGCCCua--GUCUGGAGGGUgaag -5'
17279 3' -53.4 NC_004367.1 + 116955 0.68 0.918056
Target:  5'- ---nCCGGGugccCAGGCCUCCCGg--- -3'
miRNA:   3'- gaaaGGCCCua--GUCUGGAGGGUgaag -5'
17279 3' -53.4 NC_004367.1 + 116903 0.68 0.918056
Target:  5'- ---nCCGGGugccCAGGCCUCCCGg--- -3'
miRNA:   3'- gaaaGGCCCua--GUCUGGAGGGUgaag -5'
17279 3' -53.4 NC_004367.1 + 116852 0.68 0.918056
Target:  5'- ---nCCGGGugccCAGGCCUCCCGg--- -3'
miRNA:   3'- gaaaGGCCCua--GUCUGGAGGGUgaag -5'
17279 3' -53.4 NC_004367.1 + 116699 0.68 0.918056
Target:  5'- ---nCCGGGugccCAGGCCUCCCGg--- -3'
miRNA:   3'- gaaaGGCCCua--GUCUGGAGGGUgaag -5'
17279 3' -53.4 NC_004367.1 + 117007 0.68 0.918056
Target:  5'- ---nCCGGGugccCAGGCCUCCCGg--- -3'
miRNA:   3'- gaaaGGCCCua--GUCUGGAGGGUgaag -5'
17279 3' -53.4 NC_004367.1 + 20023 0.68 0.899494
Target:  5'- aUUUCUGGGGUUgAGuACCUgcaguUCCACUUCu -3'
miRNA:   3'- gAAAGGCCCUAG-UC-UGGA-----GGGUGAAG- -5'
17279 3' -53.4 NC_004367.1 + 116801 0.69 0.88591
Target:  5'- ---nCCGGGugccCAGGCCUCCCGgguUUUCc -3'
miRNA:   3'- gaaaGGCCCua--GUCUGGAGGGU---GAAG- -5'
17279 3' -53.4 NC_004367.1 + 116676 0.76 0.542263
Target:  5'- uUUUCCGGGugccCAGGCCUCCCGg--- -3'
miRNA:   3'- gAAAGGCCCua--GUCUGGAGGGUgaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.