Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
17284 | 3' | -52.4 | NC_004367.1 | + | 100053 | 0.66 | 0.970086 |
Target: 5'- gGUGGGCUGgGGaGGAgggGUGG-GCUGGg -3' miRNA: 3'- -UACUCGACgUCgUUUa--CACCgUGACC- -5' |
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17284 | 3' | -52.4 | NC_004367.1 | + | 100089 | 0.66 | 0.970086 |
Target: 5'- gGUGGGCUGgGGaGGAgggGUGG-GCUGGg -3' miRNA: 3'- -UACUCGACgUCgUUUa--CACCgUGACC- -5' |
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17284 | 3' | -52.4 | NC_004367.1 | + | 72331 | 0.66 | 0.966906 |
Target: 5'- cUGGGCccUGCAGUAcuuUGaUGGC-CUGGa -3' miRNA: 3'- uACUCG--ACGUCGUuu-AC-ACCGuGACC- -5' |
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17284 | 3' | -52.4 | NC_004367.1 | + | 25392 | 0.67 | 0.932681 |
Target: 5'- cUGuGCUGUGGCGGuggaguUGUGuGCgACUGGg -3' miRNA: 3'- uACuCGACGUCGUUu-----ACAC-CG-UGACC- -5' |
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17284 | 3' | -52.4 | NC_004367.1 | + | 65411 | 0.68 | 0.915582 |
Target: 5'- -cGGGCUGCAuccuauGUGAauGUGUGGaaaaACUGGg -3' miRNA: 3'- uaCUCGACGU------CGUU--UACACCg---UGACC- -5' |
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17284 | 3' | -52.4 | NC_004367.1 | + | 2406 | 0.68 | 0.902873 |
Target: 5'- cAUGcAGCUGguGUug--GUGGuCGCUGGu -3' miRNA: 3'- -UAC-UCGACguCGuuuaCACC-GUGACC- -5' |
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17284 | 3' | -52.4 | NC_004367.1 | + | 52159 | 0.68 | 0.902873 |
Target: 5'- cUGAGCUGCaAGCAGu--UGGUugUGa -3' miRNA: 3'- uACUCGACG-UCGUUuacACCGugACc -5' |
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17284 | 3' | -52.4 | NC_004367.1 | + | 67296 | 0.69 | 0.889136 |
Target: 5'- -gGAGCUGgaGGUAGAUGUGGcCACa-- -3' miRNA: 3'- uaCUCGACg-UCGUUUACACC-GUGacc -5' |
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17284 | 3' | -52.4 | NC_004367.1 | + | 122855 | 0.7 | 0.815685 |
Target: 5'- gGUGAGCc-CAGCGGAUGUGGUccucccaguuCUGGg -3' miRNA: 3'- -UACUCGacGUCGUUUACACCGu---------GACC- -5' |
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17284 | 3' | -52.4 | NC_004367.1 | + | 125764 | 0.7 | 0.815685 |
Target: 5'- gGUGAGCc-CAGCGGAUGUGGUccucccaguuCUGGg -3' miRNA: 3'- -UACUCGacGUCGUUUACACCGu---------GACC- -5' |
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17284 | 3' | -52.4 | NC_004367.1 | + | 128674 | 0.7 | 0.815685 |
Target: 5'- gGUGAGCc-CAGCGGAUGUGGUccucccaguuCUGGg -3' miRNA: 3'- -UACUCGacGUCGUUUACACCGu---------GACC- -5' |
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17284 | 3' | -52.4 | NC_004367.1 | + | 55689 | 0.82 | 0.247833 |
Target: 5'- aGUGGGCUGCAGguGAguUGUGGCAUaGGg -3' miRNA: 3'- -UACUCGACGUCguUU--ACACCGUGaCC- -5' |
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17284 | 3' | -52.4 | NC_004367.1 | + | 22096 | 0.84 | 0.201853 |
Target: 5'- aGUGGGCUGCAGguGAguUGUGGCAgaGGg -3' miRNA: 3'- -UACUCGACGUCguUU--ACACCGUgaCC- -5' |
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17284 | 3' | -52.4 | NC_004367.1 | + | 81651 | 1.08 | 0.00551 |
Target: 5'- uAUGAGCUGCAGCAAAUGUGGCACUGGc -3' miRNA: 3'- -UACUCGACGUCGUUUACACCGUGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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